Parental gene: | DEK, ENSCAFG00000010184 |
| Aliases: | None |
| Description: | DEK oncogene [Source:HGNC Symbol;Acc:2768] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 35:17016288..17045594(-) |
>ENSCAFG00000010184
CGCTCCAGCTCGGTGACAGCCGGGGCCGGGAAGTTCCCCGCCGCCCGCCGCCCGCCGCCCGGCCCCTCCCGAGCGCAGGC
GGCCCCCCTCTTCCGGGAAGATTCTGAAGAGGAGGACGAGGACGACGACGAGGAGGAGGAGGAGGAGGAGGAGGAAAAAG
AAAAGAGTCTCATCGTGGAAGGCAAGAGGGAAAAGAAAAAAGTAGAGAGATTGACCATGCAAGTCTCTTCCTTACAGAGA
GAGCCATTTACAATTGCACAAGGAAAGGGGCAGAAACTTTGTGAAATTGAGAGGATACATTTCTTCCTGAGTAAAAAGAA
AACAGATGAACTTAGAAATCTACATAAACTGCTTTACAACAGACCAGGCACAGAAGTGTCCTCATTAAAGAAGAATGTGG
GTCAGTTCAGTGGCTTTCCATTTGAAAAAGGAAGTGCCCAGTATAAAAAGAAGGAAGAAATGTTGAAAAAATTTAGAAAT
GCCATGTTAAAGAGCATCTGTGAGGTTCTTGATTTGGAGAGATCGGGTGTAAATAGTGAACTGGTGAAGAGGATCTTGAA
TTTCTTAATGCATCCAAAGCCTTCTGGCAAACCATTGCCAAAATCTAAAAAAAGTTCTAGCAAAGGCAACAAAAAGGAAC
GGAACAGTTCTGGAATGGCAAGGAAAGCTAAGCGAACCAAATGTCCTGAAATCCTGTCAGATGAATCTAGCAGTGATGAA
GATGAAAAGAAAAACAAGGAAGAGTCTTCAGATGATGAAGATAAAGAAAGTGAAGAGGAGCCCCCAAAAAAGACTTCTAA
AAGAGAAAAACCTAAGCAGAAAGCCACTTCTAAGAGTAAGAAAACTGTCAAGAGTGCTAATGTTAAGAAGGCAGATAGCA
GCACCACCAAGAAAAATCAGAACAGTTCCAAAAAAGAAAGTGAATCCGAGGATAGTTCAGATGATGAACCTTTAATTAAA
AAATTAAAGAAACCTCCTACAGATGAAGAGTTAAAGGAAACCGTGAAGAAACTATTGGCTAGTGCCAACTTGGAGGAAGT
CACAATGAAGCAGATTTGCAAGGAGGTATATGAAAATTATCCTGCTTATGATTTAACTGAAAGAAAAGATTTCATAAAAA
CAACCGTGAAAGAGCTGATTTCTTGA
CGCTCCAGCTCGGTGACAGCCGGGGCCGGGAAGTTCCCCGCCGCCCGCCGCCCGCCGCCCGGCCCCTCCCGAGCGCAGGC
GGCCCCCCTCTTCCGGGAAGATTCTGAAGAGGAGGACGAGGACGACGACGAGGAGGAGGAGGAGGAGGAGGAGGAAAAAG
AAAAGAGTCTCATCGTGGAAGGCAAGAGGGAAAAGAAAAAAGTAGAGAGATTGACCATGCAAGTCTCTTCCTTACAGAGA
GAGCCATTTACAATTGCACAAGGAAAGGGGCAGAAACTTTGTGAAATTGAGAGGATACATTTCTTCCTGAGTAAAAAGAA
AACAGATGAACTTAGAAATCTACATAAACTGCTTTACAACAGACCAGGCACAGAAGTGTCCTCATTAAAGAAGAATGTGG
GTCAGTTCAGTGGCTTTCCATTTGAAAAAGGAAGTGCCCAGTATAAAAAGAAGGAAGAAATGTTGAAAAAATTTAGAAAT
GCCATGTTAAAGAGCATCTGTGAGGTTCTTGATTTGGAGAGATCGGGTGTAAATAGTGAACTGGTGAAGAGGATCTTGAA
TTTCTTAATGCATCCAAAGCCTTCTGGCAAACCATTGCCAAAATCTAAAAAAAGTTCTAGCAAAGGCAACAAAAAGGAAC
GGAACAGTTCTGGAATGGCAAGGAAAGCTAAGCGAACCAAATGTCCTGAAATCCTGTCAGATGAATCTAGCAGTGATGAA
GATGAAAAGAAAAACAAGGAAGAGTCTTCAGATGATGAAGATAAAGAAAGTGAAGAGGAGCCCCCAAAAAAGACTTCTAA
AAGAGAAAAACCTAAGCAGAAAGCCACTTCTAAGAGTAAGAAAACTGTCAAGAGTGCTAATGTTAAGAAGGCAGATAGCA
GCACCACCAAGAAAAATCAGAACAGTTCCAAAAAAGAAAGTGAATCCGAGGATAGTTCAGATGATGAACCTTTAATTAAA
AAATTAAAGAAACCTCCTACAGATGAAGAGTTAAAGGAAACCGTGAAGAAACTATTGGCTAGTGCCAACTTGGAGGAAGT
CACAATGAAGCAGATTTGCAAGGAGGTATATGAAAATTATCCTGCTTATGATTTAACTGAAAGAAAAGATTTCATAAAAA
CAACCGTGAAAGAGCTGATTTCTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 7 .54 RPM |
| SRP017611_kidney | 17 .37 RPM |
| SRP017611_liver | 7 .32 RPM |
| SRP012049_cerebellum | 26 .67 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Echinops telfairi | ENSETEG00000018188 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000004470 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000019763 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000007750 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000001075 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_1362 | 97.82 | 84.25 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000010184 retrocopies