Parental gene: | GGPS1, ENSCAFG00000011303 |
| Aliases: | None |
| Description: | geranylgeranyl diphosphate synthase 1 [Source:HGNC Symbol;Acc:4249] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 4:4592261..4598522(-) |
>ENSCAFG00000011303
ATGGAGAAGACTCAAGAAACAGTCCAAAGAATTCTTCTAGAACCCTATAAGTATTTACTTCAGTTACCAGGTAAGCAAGT
GAGAACCAAACTTTCACAGGCATTTAATCATTGGCTAAAAGTTCCAGAAGATAAGCTACAGATTATCATTGAAGTGACAG
AAATGTTGCATAATGCCAGTTTGCTCATCGATGATATTGAAGACAACTCAAAACTTCGACGTGGCTTTCCAGTGGCACAC
AGCATCTATGGAATTCCATCTGTCATCAATTCTGCCAATTATGTATATTTTCTTGGCCTACAGAAAGTCTTAACCCTTGA
CCACCCAGATGCAGTGAAGCTTTTTACCCACCAGCTTTTGGAACTCCATCAGGGACAAGGTCTAGACATTTATTGGAGGG
ATAATTACACTTGTCCCACTGAAGAAGAATATAAAGCTATGGTGCTGCAAAAGACAGGTGGACTATTTGGATTAGCAGTA
GGTCTCATGCAGTTGTTCTCTGATTACAAAGAAGATCTGAAGCCACTACTTAATACACTTGGGCTCTTTTTCCAAATTAG
GGATGATTATGCTAATCTACACTCCAAAGAATACAGTGAAAACAAAAGCTTTTGTGAAGATCTAACAGAGGGAAAGTTCT
CATTCCCTACTATTCATGCTATTTGGTCGAGACCTGAAAGCACCCAGGTGCAGAATATCTTGCGCCAGAGAACCGAAAAT
ATAGATATTAAAAAATACTGTGTACATTATCTTGAGAATGTAGGTTCTTTTGAATATACCCGGAGTACTCTTAAAGAGCT
TGAATCTAAAGCCTATAAACAAATTGATGCACGTGGTGGAAACCCTGAGCTCGTAGCTTTAATAAAGCACTTAAGCAAAA
TGTTCAAAGAAGAAAATGAATAA
ATGGAGAAGACTCAAGAAACAGTCCAAAGAATTCTTCTAGAACCCTATAAGTATTTACTTCAGTTACCAGGTAAGCAAGT
GAGAACCAAACTTTCACAGGCATTTAATCATTGGCTAAAAGTTCCAGAAGATAAGCTACAGATTATCATTGAAGTGACAG
AAATGTTGCATAATGCCAGTTTGCTCATCGATGATATTGAAGACAACTCAAAACTTCGACGTGGCTTTCCAGTGGCACAC
AGCATCTATGGAATTCCATCTGTCATCAATTCTGCCAATTATGTATATTTTCTTGGCCTACAGAAAGTCTTAACCCTTGA
CCACCCAGATGCAGTGAAGCTTTTTACCCACCAGCTTTTGGAACTCCATCAGGGACAAGGTCTAGACATTTATTGGAGGG
ATAATTACACTTGTCCCACTGAAGAAGAATATAAAGCTATGGTGCTGCAAAAGACAGGTGGACTATTTGGATTAGCAGTA
GGTCTCATGCAGTTGTTCTCTGATTACAAAGAAGATCTGAAGCCACTACTTAATACACTTGGGCTCTTTTTCCAAATTAG
GGATGATTATGCTAATCTACACTCCAAAGAATACAGTGAAAACAAAAGCTTTTGTGAAGATCTAACAGAGGGAAAGTTCT
CATTCCCTACTATTCATGCTATTTGGTCGAGACCTGAAAGCACCCAGGTGCAGAATATCTTGCGCCAGAGAACCGAAAAT
ATAGATATTAAAAAATACTGTGTACATTATCTTGAGAATGTAGGTTCTTTTGAATATACCCGGAGTACTCTTAAAGAGCT
TGAATCTAAAGCCTATAAACAAATTGATGCACGTGGTGGAAACCCTGAGCTCGTAGCTTTAATAAAGCACTTAAGCAAAA
TGTTCAAAGAAGAAAATGAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 7 .07 RPM |
| SRP017611_kidney | 13 .93 RPM |
| SRP017611_liver | 3 .77 RPM |
| SRP012049_cerebellum | 6 .93 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Echinops telfairi | ENSETEG00000008916 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000016813 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000021302 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000004263 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_1438 | 94.74 | 82.33 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000011303 retrocopies