Parental gene:

GGPS1, ENSCAFG00000011303

Aliases:None
Description:geranylgeranyl diphosphate synthase 1 [Source:HGNC Symbol;Acc:4249]
Organism:Dog (Canis familiaris)
Coordinates:4:4592261..4598522(-)


>ENSCAFG00000011303
ATGGAGAAGACTCAAGAAACAGTCCAAAGAATTCTTCTAGAACCCTATAAGTATTTACTTCAGTTACCAGGTAAGCAAGT
GAGAACCAAACTTTCACAGGCATTTAATCATTGGCTAAAAGTTCCAGAAGATAAGCTACAGATTATCATTGAAGTGACAG
AAATGTTGCATAATGCCAGTTTGCTCATCGATGATATTGAAGACAACTCAAAACTTCGACGTGGCTTTCCAGTGGCACAC
AGCATCTATGGAATTCCATCTGTCATCAATTCTGCCAATTATGTATATTTTCTTGGCCTACAGAAAGTCTTAACCCTTGA
CCACCCAGATGCAGTGAAGCTTTTTACCCACCAGCTTTTGGAACTCCATCAGGGACAAGGTCTAGACATTTATTGGAGGG
ATAATTACACTTGTCCCACTGAAGAAGAATATAAAGCTATGGTGCTGCAAAAGACAGGTGGACTATTTGGATTAGCAGTA
GGTCTCATGCAGTTGTTCTCTGATTACAAAGAAGATCTGAAGCCACTACTTAATACACTTGGGCTCTTTTTCCAAATTAG
GGATGATTATGCTAATCTACACTCCAAAGAATACAGTGAAAACAAAAGCTTTTGTGAAGATCTAACAGAGGGAAAGTTCT
CATTCCCTACTATTCATGCTATTTGGTCGAGACCTGAAAGCACCCAGGTGCAGAATATCTTGCGCCAGAGAACCGAAAAT
ATAGATATTAAAAAATACTGTGTACATTATCTTGAGAATGTAGGTTCTTTTGAATATACCCGGAGTACTCTTAAAGAGCT
TGAATCTAAAGCCTATAAACAAATTGATGCACGTGGTGGAAACCCTGAGCTCGTAGCTTTAATAAAGCACTTAAGCAAAA
TGTTCAAAGAAGAAAATGAATAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 6 .93 RPM
SRP017611_brain 7 .07 RPM
SRP017611_kidney 13 .93 RPM
SRP017611_liver 3 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000008916 ortholog_one2one 1 retrogene
retro_etel_1265,
Myotis lucifugus ENSMLUG00000016813 ortholog_one2many 1 retrogene
retro_mluc_54,
Mus musculus ENSMUSG00000021302 ortholog_one2one 1 retrogene
retro_mmus_1253,
Ictidomys tridecemlineatus ENSSTOG00000004263 ortholog_one2one 1 retrogene
retro_itri_619,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1438 94.74 82.33
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Download FASTA sequences of all ENSCAFG00000011303 retrocopies