RetrogeneDB ID: retro_mluc_54

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429813:7016585..7017485(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028002
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000016813
• Aliases: None
• Description: None

Sequence

>retro_mluc_54
ATGGAGAAGACTCAAGAAAAAGTCCAAAGAATTCTTCTAGAACCCTACAAGTACTTGCTTCAGTTACCAGGTAAGCAAGT
GAGAACCAAACTTTCACAGGCATTTAATCATTGGCTAAAAGTTCCAGACGACAAGCTTCAGATTATCATTGAAGTGACGG
AAATGCTGCATAATGCCAGTTTGCTCATCGATGATATCGAAGACAACTCGAAGCTCCGATGTGGCTTTCCCATGGCACAC
AGCATCTATGGGATTCCGTCTGTCATCAATTCTGCCAATTATGTATATTTTCTTGGCCTAGAGAAAGTCTTAACTCTTGA
TCACCCCGATGCAGTTAAGCTTTTTACGCGCCAGCTCTTGGAACTCCATCAAGGACGAGGCCTGGATATTTATTGGCGGG
ATAGCTACACTTGTCCCACGGAAGAAGAATATAAAGCTATGGTGCAGCAGAAGACAGCTGGACTGTTTGGATTAGCGGTA
GGTCTCATGCAGTTGTTCTCTGATTACAAAGAAGATTTAAAGTCACTACTTGATACACTTGGGCTCTTTTTCCAAATTAG
AGATGATTATGCTAATCTACACTCCAAAGAATATAGTGAAAACAAAAGCTTCTGTGAAGATCTCACAGAGGGAAAGTTCT
CGTTCCCTACTATTCATGCGATTTGGTTGAAGCCTGAAAGCACGCAGGTGCAGAACATCTTGTGCCAGAGAACCGAAAAT
GTAGACATTAAGAAATACTGTGTACATTATCTTGAGAACGTGGGTTCTTTTGAATATACGTGGAATACTCTGAAAGAGCT
TGAAGCTAGAGCCTACAAACAAATTGATGCGCTTGGTGGCAACCCTGAACTGGTAGCTCTAATAACGCACTTAAGTAAAA
TGTTCAAAGAAGAGAATTAG

Alignment

ORF - retro_mluc_54 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.32 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEKTQEKVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPDDKLQIIIEVTEMLHNASLLIDDIEDNS
          MEKTQEKVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPDDKLQIIIEVTEMLHNASLLIDDIEDNS
Retrocopy MEKTQEKVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPDDKLQIIIEVTEMLHNASLLIDDIEDNS

Parental  KLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDSYTCPT
          KLR.GFP.AHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQG.GLDIYWRDSYTCPT
Retrocopy KLRCGFPMAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGRGLDIYWRDSYTCPT

Parental  EEEYKAMVQQKTGGLFGLAVGLMQLFSDYKEDLKSLLDTLGLFFQIRDDYANLHSKEYSENKSFCEDLTE
          EEEYKAMVQQKT.GLFGLAVGLMQLFSDYKEDLKSLLDTLGLFFQIRDDYANLHSKEYSENKSFCEDLTE
Retrocopy EEEYKAMVQQKTAGLFGLAVGLMQLFSDYKEDLKSLLDTLGLFFQIRDDYANLHSKEYSENKSFCEDLTE

Parental  GKFSFPTIHAIWFKPESTQVQNILRQRTENVDIKKYCVHYLESVGSFEYTRNTLQELEAKAYKQIDALGG
          GKFSFPTIHAIW.KPESTQVQNIL.QRTENVDIKKYCVHYLE.VGSFEYT.NTL.ELEA.AYKQIDALGG
Retrocopy GKFSFPTIHAIWLKPESTQVQNILCQRTENVDIKKYCVHYLENVGSFEYTWNTLKELEARAYKQIDALGG

Parental  NPELVALITQLSKMFKEEN
          NPELVALIT.LSKMFKEEN
Retrocopy NPELVALITHLSKMFKEEN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_54 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000011303	1 retrocopy	retro_cfam_1438,
Echinops telfairi	ENSETEG00000008916	1 retrocopy	retro_etel_1265,
Myotis lucifugus	ENSMLUG00000016813	1 retrocopy	retro_mluc_54 ,
Mus musculus	ENSMUSG00000021302	1 retrocopy	retro_mmus_1253,
Ictidomys tridecemlineatus	ENSSTOG00000004263	1 retrocopy	retro_itri_619,