Parental gene:

HSP90AA1, ENSCAFG00000018036

Aliases:None
Description:heat shock protein 90kDa alpha (cytosolic), class A member 1 [Source:HGNC Symbol;Acc:5253]
Organism:Dog (Canis familiaris)
Coordinates:8:70092236..70096164(-)


>ENSCAFG00000018036
NTCAATAACCTGGGTACCATCGCCAAGTCGGGGACCAAGGCGTTCATGGAGGCCTTGCAGGCTGGCGCAGATATTTCCAT
GATTGGCCAGTTTGGCGTCGGGTTTTATTCTGCCTACCTGGTGGCTGAGAAAGTGACGGTGATCACCAAGCATAACGACG
ACGAGCAGTATGCCTGGGAGTCTTCGGCTGGAGGGTCGTTCACGGTTAGGACGGATACAGGTGAACCTATGGGTCGTGGA
ACAAAGGTTATCCTGCATCTGAAGGAAGACCAGACTGAGTATCTGGAGGAGAGGAGGATAAAGGAGATTGTGAAGAAACA
TTCTCAGTTCATTGGCTACCCCATTACTCTCTTTGTGGAGAAGGAACGTGATAAAGAAGTCAGTGACGATGAGGCTGAAG
AAAAGGAGGAGAAAGAGGAAGAAAAAGAAAAGAAAGAGAAAGAGTCTGATGACAAACCTGAAATAGAAGATGTTGGTTCG
GATGAGGAGGAGGAGGAAAAGAAGGATGGAGACAAGAAGAAAAAGAAGAAGATCAAGGAGAAGTACATTGACCAGGAAGA
GCTGAACAAAACCAAGCCTATTTGGACCAGGAACCCTGACGACATCACCAACGAAGAATATGGGGAATTTTACAAGAGCT
TGACCAATGACTGGGAAGATCACTTGGCAGTGAAGCATTTTTCAGTTGAAGGACAGCTGGAGTTCAGAGCCCTTCTCTTT
GTGCCAAGACGTGCTCCCTTTGACCTATTCGAGAACAGAAAGAAAAAGAACAATATTAAGCTGTACGTTCGCAGAGTTTT
CATTATGGATAACTGCGAAGAGCTGATCCCTGAGTATCTGAATTTCATTAGAGGTGTGGTGGACTCTGAAGATCTTCCTC
TAAATATTTCCCGTGAGATGTTGCAGCAAAGCAAAATTTTGAAAGTTATCAGAAAAAATTTGGTCAAAAAGTGCTTGGAA
CTTTTCACCGAACTGGCTGAAGACAAAGAGAACTACAAAAAGTTTTACGAGCAGTTCTCGAAAAACATCAAGCTGGGAAT
ACATGAAGATTCTCAAAATCGGAAGAAGCTGTCAGAGCTGTTACGATACTACACGTCGGCTTCTGGTGATGAGATGGTTT
CTCTCAAGGATTATTGCACTAGAATGAAGGAAAACCAGAAACACATCTATTACATCACAGGTGAGACCAAGGACCAGGTA
GCAAACTCTGCCTTTGTGGAGCGTCTTCGGAAGCATGGCCTGGAAGTGATCTATATGATCGAACCCATCGATGAGTACTG
TGTCCAACAGCTTAAGGAATTTGAGGGGAAGACATTGGTGTCAGTCACCAAAGAGGGTTTGGAACTTCCAGAAGACGAAG
AAGAGAAGAAGAAACAGGAGGAGAAAAAAACAAAGTTTGAAAATCTGTGCAAGATCATGAAGGACATCTTGGAGAAAAAA
GTAGAAAAGGTGGTCGTGTCAAACCGATTGGTGACCTCCCCGTGCTGCATTGTCACAAGCACATATGGCTGGACGGCAAA
TATGGAGAGAATCATGAAGGCCCAAGCCTTAAGAGACAACTCCACCATGGGTTACATGGCAGCAAAGAAACACCTGGAGA
TAAACCCTGACCACTCCATCATCGAGACCTTACGGCAGAAGGCAGAGGCCGACAAGAACGACAAGTCTGTGAAAGATCTG
GTCATCCTGCTCTATGAAACCGCTCTCCTGTCCTCCGGCTTCAGTCTGGAAGATCCCCAGACACATGCTAACAGGATCTA
CAGGATGATCAAGCTTGGGCTCGGTATCGACGAAGATGACCCCACAGCTGACGATAGTAGTGCTGCGGTGAGTGAGGAGA
TGCCGCCCCTCGAAGGTGATGATGACACGTCACGCATGGAAGAAGTCGATTAA

Library Parental gene expression (RPM)
SRP017611_brain 925 .48 RPM
SRP017611_kidney 282 .44 RPM
SRP017611_liver 276 .42 RPM
SRP012049_cerebellum 645 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001981 within_species_paralog 4 retrogenes
retro_cfam_1108, retro_cfam_411, retro_cfam_562, retro_cfam_881,
Callithrix jacchus ENSCJAG00000033945 possible_ortholog 8 retrogenes
retro_cjac_1818, retro_cjac_2300, retro_cjac_2835, retro_cjac_3514, retro_cjac_3596, retro_cjac_3601, retro_cjac_3626, retro_cjac_502,
Macaca mulatta ENSMMUG00000011073 ortholog_one2one 2 retrogenes
retro_mmul_1526, retro_mmul_2313,
Monodelphis domestica ENSMODG00000013302 ortholog_one2many 3 retrogenes
retro_mdom_1653, retro_mdom_2010, retro_mdom_817,
Pongo abelii ENSPPYG00000006153 ortholog_one2many 1 retrogene
retro_pabe_1760,
Rattus norvegicus ENSRNOG00000007219 possible_ortholog 1 retrogene
retro_rnor_860,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1094 90.63 99.84
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCAFG00000018036 retrocopies