RetrogeneDB ID: | retro_mmul_1526 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:102555156..102555716(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPCA | ||
Ensembl ID: | ENSMMUG00000011073 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.76 % |
Parental protein coverage: | 60.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | ELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIV-DTGIGMTKADLINNLGTIA-KSG |
ELISNSSD.LDKI.YESL.DPSKLDSGKELHINLIPNKQD.TLTI...T.IGM.KAD.INNLGT.A..S. | |
Retrocopy | ELISNSSDVLDKI*YESLMDPSKLDSGKELHINLIPNKQDQTLTIR<GTEIGMAKADSINNLGTVA<QSE |
Parental | TKAFMEALQAGAD-ISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT-GEPMGR |
TKAF.E..Q.G...ISMIGQFG.GFY.AYLVAEKVTVITKH...EQ.AWESS.G.S.TVRTDT..EP.G. | |
Retrocopy | TKAFVEVFQSGTE<ISMIGQFGAGFYFAYLVAEKVTVITKHKH-EQHAWESSSGVSLTVRTDT<SEPTGH |
Parental | GTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEA |
G.K..LHLKED.TEYLEERR.KEIVKKHSQFIGYPITL.VEK.RDKEVSDDEA | |
Retrocopy | GAKGTLHLKEDLTEYLEERRMKEIVKKHSQFIGYPITLSVEKKRDKEVSDDEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1060 .33 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 836 .06 RPM |
SRP007412_cerebellum | 0 .00 RPM | 849 .54 RPM |
SRP007412_heart | 0 .00 RPM | 332 .82 RPM |
SRP007412_kidney | 0 .00 RPM | 477 .57 RPM |
SRP007412_liver | 0 .00 RPM | 426 .36 RPM |
SRP007412_testis | 0 .00 RPM | 1122 .06 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018036 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000033945 | 8 retrocopies | |
Macaca mulatta | ENSMMUG00000011073 | 2 retrocopies |
retro_mmul_1526 , retro_mmul_2313,
|
Macaca mulatta | ENSMMUG00000022686 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000023469 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000013302 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000006153 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000007219 | 1 retrocopy |