RetrogeneDB ID: | retro_pabe_1760 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1_random:16307958..16309063(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000006153 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.79 % |
Parental protein coverage: | 61.14 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | KKNNIKLY-VRRVFIMDNCEEL-IPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELF |
KKN......V.RVFIMD.CEEL.I..YLNFI..VVDS.DL.LNIS.EMLQQSKILKVIRKNLVKKCLELF | |
Retrocopy | KKNHHQIV<VYRVFIMDSCEEL<ILPYLNFIGKVVDSKDLCLNISHEMLQQSKILKVIRKNLVKKCLELF |
Parental | TELAEDKENYKKFYEQFSKNIKLGIHEDSQNRKKLSELLRYYTSASG-DEMVSLKDYCTRMKENQKHIYY |
T.LAEDKENYKKFY.QFSK.IKL.I..DSQ..KK.SELLRYYTSASG.DEMVSLKDYCTRMKEN.KHIYY | |
Retrocopy | TKLAEDKENYKKFYKQFSKSIKLEIYKDSQHWKKFSELLRYYTSASG>DEMVSLKDYCTRMKEN*KHIYY |
Parental | ITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQ-LKEFEGKTLVSVTKEGLELPEDEEEKKKQE |
ITGETKDQVA...FVE.L.KHGLEVIYMI.PIDEYCVQ..LKEFEGKTL.SVTKEGLELPED........ | |
Retrocopy | ITGETKDQVAK--FVECLWKHGLEVIYMIKPIDEYCVQH<LKEFEGKTLASVTKEGLELPEDXXXXXXXX |
Parental | EKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKK |
.....FEN.CKIMKD.LEKKVEKVVVSN.LV.SPCCIV.S.YGWTAN.ER.MKAQALRDNSTMGYMAAKK | |
Retrocopy | XXXXXFENICKIMKDLLEKKVEKVVVSN*LVASPCCIVMSIYGWTANVERVMKAQALRDNSTMGYMAAKK |
Parental | HLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDD |
HLEINPDHSI.ETLRQKAEA.K..KSV.DLVILLYETALLSSGF.LEDPQTHANRIYRMIKLG.GIDE.D | |
Retrocopy | HLEINPDHSITETLRQKAEAYKY-KSV*DLVILLYETALLSSGFGLEDPQTHANRIYRMIKLGVGIDEND |
Parental | PTADDTSAAVTEEMPPLEGDDDTSRMEEVD |
PTADDT....TEEM.PLEGD.DTS.MEE.D | |
Retrocopy | PTADDT----TEEMSPLEGDNDTSCMEETD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 1114 .11 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1481 .95 RPM |
SRP007412_heart | 0 .00 RPM | 453 .18 RPM |
SRP007412_kidney | 0 .00 RPM | 612 .62 RPM |
SRP007412_liver | 0 .00 RPM | 502 .66 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006270 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000018036 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000033945 | 8 retrocopies | |
Cavia porcellus | ENSCPOG00000002015 | 1 retrocopy | |
Homo sapiens | ENSG00000080824 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000011073 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000013302 | 3 retrocopies | |
Mus musculus | ENSMUSG00000021270 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015925 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000006153 | 1 retrocopy |
retro_pabe_1760 ,
|
Pongo abelii | ENSPPYG00000016655 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006736 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000007219 | 1 retrocopy |