RetrogeneDB ID: | retro_cjac_2835 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 6:106812660..106813843(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000033945 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.46 % |
Parental protein coverage: | 66.01 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | QLEFRALLFVPRRAPFDL-FE-NRKKKNNIKLYVRRVFIMDNCEELIPEYYIYFIRGVVDSEDLPLNISR |
QLEFRALLF...R.PFDL.FE...K..N..........IMD.C.ELIPEY...FI.G.VDSEDLPLN.S. | |
Retrocopy | QLEFRALLFILIRLPFDL<FETDKKTSNSMSVCI----IMDSCDELIPEY-LNFICGAVDSEDLPLNSS* |
Parental | EMLQQSKILKVIRKNLVKKCLELFTELAEDKENYKKFYEQFSKNIKLGIHEDSQNRKKLSELLRYYTSAS |
EMLQQSKILKVI.KN.VKKCLELF..LAEDKENYKKFYE.FSKN.KLGIHEDS.N...LSELLRY.TS.S | |
Retrocopy | EMLQQSKILKVICKNVVKKCLELFSKLAEDKENYKKFYEAFSKNLKLGIHEDSTNQRRLSELLRYHTSQS |
Parental | GDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKT |
G.EM.SL..Y...MKE.QK..YYITGE.K.QVANSAF.ER.RK.G.EV..M.EPID.YCV.QLKEF.GK. | |
Retrocopy | GSEMTSLSEYVSLMKETQKSMYYITGESKEQVANSAFMERVRKRGFEVVSMTEPIDKYCVRQLKEFDGKS |
Parental | LVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANM |
LVSVTKEGLEL.EDE.EKKK.EE.K.KF.NLCK.M..IL..KVEKV..SNRLV.SPCCIVTSTY.WTANM | |
Retrocopy | LVSVTKEGLELLEDE*EKKKMEESKAKFQNLCKLMEEILD-KVEKVTISNRLVSSPCCIVTSTYSWTANM |
Parental | ERIMKAQALRDNSTMGYMAAKKHLEINPDH-SIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLE |
ERIMKAQAL..NST..YM.AKKHLEINPDH..I.ET.RQKAEA.KNDK.VKDLV.LL.ETALLSSGF.LE | |
Retrocopy | ERIMKAQALQGNSTRSYMMAKKHLEINPDH<PIGETPRQKAEAGKNDKAVKDLVVLLFETALLSSGFYLE |
Parental | DPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD |
DPQT..N.IYRM.KLGLGI.ED...A...SAAV..E.PP.EGD.D.SRME.VD | |
Retrocopy | DPQTYSNCIYRMTKLGLGIYEDEVAAEESSAAVPDEIPPPEGDEDASRMEVVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .09 RPM | 168 .69 RPM |
SRP051959_heart | 0 .11 RPM | 217 .01 RPM |
SRP051959_kidney | 0 .02 RPM | 145 .21 RPM |
SRP051959_liver | 0 .11 RPM | 269 .35 RPM |
SRP051959_lung | 0 .15 RPM | 194 .35 RPM |
SRP051959_lymph_node | 0 .14 RPM | 189 .24 RPM |
SRP051959_skeletal_muscle | 0 .15 RPM | 221 .48 RPM |
SRP051959_spleen | 0 .08 RPM | 164 .20 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006270 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000018036 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000033945 | 8 retrocopies |
retro_cjac_1818, retro_cjac_2300, retro_cjac_2835 , retro_cjac_3514, retro_cjac_3596, retro_cjac_3601, retro_cjac_3626, retro_cjac_502,
|
Cavia porcellus | ENSCPOG00000002015 | 1 retrocopy | |
Homo sapiens | ENSG00000080824 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000011073 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000013302 | 3 retrocopies | |
Mus musculus | ENSMUSG00000021270 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015925 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000006153 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006736 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000007219 | 1 retrocopy |