Parental gene: | TSPAN3, ENSCAFG00000018068 |
| Aliases: | None |
| Description: | tetraspanin 3 [Source:HGNC Symbol;Acc:17752] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 30:39248313..39263338(+) |
>ENSCAFG00000018068
TTAACACTTAGCTTCACACTGCTTTTGATCATTCACATGATAGTAAGTTTTTGGAAAGGGGCAGCTGGCATTTTATGTTA
TGTGGGAGCCTATGTCTTTATCACTTACGATGACTATGACCACTTCTTTGAAGATGTGTATACTCTCATTCCTGCTGTAG
TGATCATAGCTGTAGGAGCCCTGCTTTTCATTATTGGCCTAATTGGCTGCTGTGCCACAATCCGGGAAAGCCGCTGTGGA
CTTGCCACGTTTGTCATCATCCTACTCTTGGTTTTTGTCACAGAAGTTGTTGTTGTGGTTTTGGGATACGTTTACAGAGC
AAAGGTGGAAAATGAGGTCGATCGCAGCATTCAGAAAGTGTATAAGACCTACAATGGAACGAACCCTGATGCTGCTAGCC
GGGCTATTGATTATGTACAGAGACAGCTGCATTGTTGTGGAATTCACAACTATTCAGACTGGGAAAATACAGACTGGTTC
AAAGAAACCAAAAACCAGAGTGTCCCTCTTAGCTGCTGCAGAGAGACCGCCAGCAGCTGTAATGGCAGCCTGGCCCACCC
CTCCAACCTCTATGCCGAGGGATGTGAGGCTCTAGTTGTAAAGAAGCTACAGGAAATCATGATGCATGTTATCTGGGCAG
CGCTGGCATTTGCAGCTATTCAGCTGCTGGGCATGTTATGTGCATGCATCGTACTGTGCAGAAGGAGTAGAGATCCTGCT
TATGAGCTCCTCATCACCGGTGGAACGTATGCATAG
TTAACACTTAGCTTCACACTGCTTTTGATCATTCACATGATAGTAAGTTTTTGGAAAGGGGCAGCTGGCATTTTATGTTA
TGTGGGAGCCTATGTCTTTATCACTTACGATGACTATGACCACTTCTTTGAAGATGTGTATACTCTCATTCCTGCTGTAG
TGATCATAGCTGTAGGAGCCCTGCTTTTCATTATTGGCCTAATTGGCTGCTGTGCCACAATCCGGGAAAGCCGCTGTGGA
CTTGCCACGTTTGTCATCATCCTACTCTTGGTTTTTGTCACAGAAGTTGTTGTTGTGGTTTTGGGATACGTTTACAGAGC
AAAGGTGGAAAATGAGGTCGATCGCAGCATTCAGAAAGTGTATAAGACCTACAATGGAACGAACCCTGATGCTGCTAGCC
GGGCTATTGATTATGTACAGAGACAGCTGCATTGTTGTGGAATTCACAACTATTCAGACTGGGAAAATACAGACTGGTTC
AAAGAAACCAAAAACCAGAGTGTCCCTCTTAGCTGCTGCAGAGAGACCGCCAGCAGCTGTAATGGCAGCCTGGCCCACCC
CTCCAACCTCTATGCCGAGGGATGTGAGGCTCTAGTTGTAAAGAAGCTACAGGAAATCATGATGCATGTTATCTGGGCAG
CGCTGGCATTTGCAGCTATTCAGCTGCTGGGCATGTTATGTGCATGCATCGTACTGTGCAGAAGGAGTAGAGATCCTGCT
TATGAGCTCCTCATCACCGGTGGAACGTATGCATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 105 .51 RPM |
| SRP017611_kidney | 124 .41 RPM |
| SRP017611_liver | 23 .71 RPM |
| SRP012049_cerebellum | 152 .04 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009727 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000002415 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000017521 | within_species_paralog | 3 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000003785 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000005619 | ortholog_one2one | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000010916 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000025746 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000017332 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000004662 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000005615 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_571 | 72.77 | 79.28 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_1391 | 95.32 | 93.63 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000018068 retrocopies