RetrogeneDB ID: | retro_cfam_1600 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 36:11616978..11617457(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TSPAN6 | ||
Ensembl ID: | ENSCAFG00000017521 | ||
Aliases: | None | ||
Description: | tetraspanin 6 [Source:HGNC Symbol;Acc:11858] |
Percent Identity: | 88.96 % |
Parental protein coverage: | 56.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | APGAVG-QGRGV-MASPSRRLQTKPVITCFKSV-LLIYTFIFWITGLILLAVGIWGKVSLENYFSLLNEK |
APGAVG.QGRG..MASPS.RLQTKPVITCFKS..LLIYTFIFWITG.ILLA.GIWGKVSLENYFSLLNEK | |
Retrocopy | APGAVG>QGRGLLMASPSQRLQTKPVITCFKSA<LLIYTFIFWITGVILLAIGIWGKVSLENYFSLLNEK |
Parental | ATNVPFVLIGTGTVIILLGTFGCFATCRASAWMLKL-YAMFLTLIFLVELVAAIVGFVFRHEIRNSFKSN |
ATNVPF.LIGTGTVIILLGTFGCFATCRASAWMLKL.YAMFLTLIFLVELVAAI..FVF.HEIRNSFK.N | |
Retrocopy | ATNVPFMLIGTGTVIILLGTFGCFATCRASAWMLKL<YAMFLTLIFLVELVAAIIEFVFMHEIRNSFKNN |
Parental | YERTLKQYNSTGDYRSDAVDKIQ |
YE..LKQYNS.GDYRSDAVDKI. | |
Retrocopy | YEKILKQYNSMGDYRSDAVDKIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 16 .51 RPM |
SRP017611_brain | 0 .00 RPM | 8 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 55 .34 RPM |
SRP017611_liver | 0 .00 RPM | 7 .90 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000017521 | 3 retrocopies |
retro_cfam_1600 , retro_cfam_1609, retro_cfam_878,
|
Canis familiaris | ENSCAFG00000018068 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000004288 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012276 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000027296 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011370 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007505 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004869 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000000274 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012481 | 1 retrocopy |