Parental gene: | TSPAN6, ENSCAFG00000017521 |
| Aliases: | None |
| Description: | tetraspanin 6 [Source:HGNC Symbol;Acc:11858] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | X:74500565..74505498(-) |
>ENSCAFG00000017521
TTCTCAGTTGTAGACGCTCGTGAGTTTCCGGCAGTTTCCGGGGAGACTCGGGGACTCTGCGTCTCCCCCGCTCCGCTCCG
CGCGCCCGGTGCGGTGGGGCAGGGTCGTGGCGTCATGGCGTCCCCGTCTCGGAGACTGCAGACGAAACCAGTCATTACTT
GTTTCAAGAGCGTCCTCCTGATCTACACTTTCATCTTCTGGATCACTGGCCTAATCCTTCTTGCCGTTGGCATTTGGGGC
AAGGTGAGCCTGGAGAATTATTTTTCCCTTTTAAATGAGAAGGCCACCAATGTCCCCTTCGTGCTCATTGGCACTGGCAC
TGTCATCATTCTTTTGGGCACCTTTGGCTGTTTTGCTACCTGCCGAGCTTCTGCATGGATGCTAAAACTGTATGCAATGT
TTCTGACTCTCATTTTTTTGGTTGAATTGGTCGCTGCCATCGTAGGATTTGTTTTCAGACATGAGATTAGGAACAGCTTT
AAGAGTAATTATGAGAGAACTTTAAAGCAGTATAACTCTACGGGAGATTATAGAAGCGATGCAGTAGACAAGATTCAAAA
TACGTTACATTGTTGTGGTGTCACCGACTATAGAGATTGGAGGGATACTAATTATTACTCAGAAAAAGGATTTCCCAAGA
GTTGCTGTAAACTTGAAAATTGTTCTCCACAGAGAGATGCAGATAAAGTAAACAATGAAGGTTGTTTTATAAAGGTGATG
ACCATTATAGAGTCAGAAATGGGAGTGGTTGCGGGAATTTCTTTTGGAGTTGCTTGCTTTCAGCTGGTTGGAATCTTTCT
TTCCTACTGCCTCTCTCGCGCCATAACAAATAACCAGTATGAGATAGTGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012049_cerebellum | 16 .51 RPM |
| SRP017611_brain | 8 .89 RPM |
| SRP017611_kidney | 55 .34 RPM |
| SRP017611_liver | 7 .90 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000018068 | within_species_paralog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000004288 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000012276 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000027296 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000011370 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000007505 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000004869 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000000274 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000012481 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_878 | 94.74 | 86.93 | Please wait, loading  |
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| 2. | retro_cfam_1600 | 88.96 | 56.18 | Please wait, loading |
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| 3. | retro_cfam_1609 | 88.33 | 89.40 | Please wait, loading |
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Download FASTA sequences of all ENSCAFG00000017521 retrocopies