Parental gene:

ENSCAFG00000029395

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:17:20363873..20399931(+)


>ENSCAFG00000029395
ATGACTTCCATCTTGACTTACACATTTAAAAATCTTCCTAATGCATCAAAATGGGCCCTCCGATTTTCTGTAAGACCTCT
GAGCTGTTCCTCCCAGCTACGAGCTGCCCCAGCTGCACAGACCAAATCAAAGAAAACCTTAGCCAAACCCAACATAAGGA
ATATTGTGGTAGTGGATGGTGTTCGCATTCCGTTTTTGCAGTCAGGCACTTCATATAAGGACCTGATGCCACATGATTTG
GCTAGAGCAGCACTTTCGGGTTTGTTGCACCGGACCAATGTCCCAAAGGATGTTGTTGATTATATCATCTTTGGCACAGT
TATACAGGAAGTGAAAACTAGCAATGTGGCTAGAGAGGCTGCCCTTGGAGCTGGCTTCTCTGATAAGACTCCTGCTCACA
CTGTCACCATGGCCTGCATCTCTGCCAACCAAGCCATGACCACAGGTGTTGGCTTGATCGCTTCTGGGCAGTGTGATGTG
GTTGTGGCAGGTGGTGTAGAGTTAATGTCTGATGTCCCTATTCGTCATTCAAGGAAAATGAGGAAAATGATGCTTGATCT
CAATAAGGCCAAGACTCTGGGTCAACGACTATCTTTACTCTCAAAATTCAGATTGAATTTCCTGTCACCTGAGCTCCCTG
CCGTGGCTGAGTTCTCCACCAGTGAGACCATGGGCCACTCTGCAGACCGGCTAGCCGCTGCCTTTGCTGTTTCTCGAGCG
GACCAGGATGAGTACGCACTGCGCTCGCACAGCCTTGCCAAGAAGGCACAGGATGAAGGACTCCTGTCTGATATTGTACC
CTTCAAAGTACCAGGAAAAGATACAGTTACCAAAGATAATGGCATTCGTCCTTCTTCTCTGGAGCAAATGGCCAAACTAA
AACCTGCATTCATCAAGCCCTATGGCACGGTGACAGCTGCAAATTCTTCTTTCCTGACCGATGGTGCATCTGCAATGCTG
ATTATGGCAGAGGAAAAAGCTCTGGCCATGGGTTATAAGCCCAAGGCGTATTTGAGGGATTTTGTATATGTGTCTCAAGA
TCCAAAAGATCAACTTTTACTTGGACCAACATATGCCACTCCAAAGGTTCTGGAAAAAGCAGGATTAACACTGAATGATA
TAGATGCTTTTGAATTTCATGAAGCATTCTCAGGTCAGATTTTGGCTAATTTTAAAGCCATGGATTCTGATTGGTTTGCA
CAAAACTACATGGGTAGAAAAACCAAGGGGAGCCAGGTTGGGTCACCTCCTCTGGAGAAGTTTAACAACTGGGGTGGATC
GCTGTCCCTGGGACACCCATTTGGAGCTACTGGCTGCCGGTTGGTTATGGCAGCTGCCAACAGATTACGGAAGGAGGGAG
GCCAGTATGGCTTAGTGGCTGCCTGTGCAGCTGGTGGGCAGGGCCATGCTATGATTGTGGAAGCTTATCCAAAATAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 29 .90 RPM
SRP017611_brain 22 .07 RPM
SRP017611_kidney 326 .22 RPM
SRP017611_liver 145 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002288 ortholog_one2one 1 retrogene
retro_amel_1473,
Choloepus hoffmanni ENSCHOG00000010050 ortholog_one2many 3 retrogenes
retro_chof_122, retro_chof_1869, retro_chof_911,
Homo sapiens ENSG00000138029 ortholog_one2many 1 retrogene
retro_hsap_4778,
Gorilla gorilla ENSGGOG00000025829 ortholog_one2many 1 retrogene
retro_ggor_2976,
Microcebus murinus ENSMICG00000006750 ortholog_one2many 1 retrogene
retro_mmur_1315,
Mus musculus ENSMUSG00000059447 ortholog_one2many 2 retrogenes
retro_mmus_1427, retro_mmus_1961,
Otolemur garnettii ENSOGAG00000005444 ortholog_many2many 1 retrogene
retro_ogar_167,
Pongo abelii ENSPPYG00000012582 ortholog_one2many 1 retrogene
retro_pabe_3718,
Pan troglodytes ENSPTRG00000011733 ortholog_one2many 1 retrogene
retro_ptro_3180,
Tarsius syrichta ENSTSYG00000003570 ortholog_one2many 2 retrogenes
retro_tsyr_1316, retro_tsyr_1951,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_2114 97.49 100.00
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Download FASTA sequences of all ENSCAFG00000029395 retrocopies