Parental gene:

SRSF7, ENSCAFG00000029620

Aliases:None
Description:serine/arginine-rich splicing factor 7 [Source:HGNC Symbol;Acc:10789]
Organism:Dog (Canis familiaris)
Coordinates:17:30805540..30816120(-)


>ENSCAFG00000029620
ATGTCGCGTTACGGGCGGTACGGAGGAGAAACCAAGGTGTATGTTGGTAATCTGGGAACCGGTGCCGGCAAAGGAGAGTT
AGAAAGGGCTTTCAGTTATTATGGTCCTTTAAGAACTGTGTGGATTGCGAGAAATCCTCCAGGATTTGCCTTTGTGGAAT
TTGAAGATCCTAGAGATGCAGAAGATGCAGTGCGAGGCCTGGATGGGAAGGTGATTTGTGGTTCCCGAGTGAGAGTTGAA
TTATCAACAGGCATGCCTCGGAGATCTCGTTTTGATAGACCACCTGCCCGACGTCCCTTTGATCCCAATGATAGATGCTA
TGAATGTGGCGAAAAGGGACATTATGCTTATGATTGTCATCGTTATAGCCGGCGGCGGCGAAGCAGGTCACGATCTAGAT
CACATTCAAGATCCAGAGGTAGGCGATACTCCCGCTCACGCAGCAGGAGCAGGGGAAGGAGGTCAAGATCAGCATCTCCA
CGACGATCAAGATCTGTGTCTCTTCGTAGATCAAGATCAGCTTCGCTCAGACGATCTAGGTCTGGTTCTATAAAAGGATC
GAGGTATTTCCAATCCCGGTCGAGGTCAAGATCAAGATCCAGATCACTTTCACGACCAAGAAGCAGCCGATCAAAGTCCA
GATCTCCATCTCCAAAAAGAAGTCGTTCCCCATCAGGAAGTCCGCGAAGAAGTGCAAGTCCTGAGAGAGTGGACTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 49 .98 RPM
SRP017611_brain 27 .71 RPM
SRP017611_kidney 34 .87 RPM
SRP017611_liver 17 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015988 ortholog_one2one 1 retrogene
retro_amel_1025,
Canis familiaris ENSCAFG00000009289 other_paralog 1 retrogene
retro_cfam_392,
Dasypus novemcinctus ENSDNOG00000007821 ortholog_one2one 2 retrogenes
retro_dnov_317, retro_dnov_829,
Macropus eugenii ENSMEUG00000016459 ortholog_one2many 1 retrogene
retro_meug_1048,
Myotis lucifugus ENSMLUG00000009536 ortholog_one2many 2 retrogenes
retro_mluc_2005, retro_mluc_972,
Monodelphis domestica ENSMODG00000008669 ortholog_one2many 1 retrogene
retro_mdom_289,
Mus musculus ENSMUSG00000024097 ortholog_one2one 1 retrogene
retro_mmus_3288,
Otolemur garnettii ENSOGAG00000010169 ortholog_one2one 2 retrogenes
retro_ogar_3467, retro_ogar_3481,
Rattus norvegicus ENSRNOG00000027360 ortholog_one2many 11 retrogenes
retro_rnor_1535, retro_rnor_1977, retro_rnor_1984, retro_rnor_2419, retro_rnor_2420, retro_rnor_2421, retro_rnor_2495, retro_rnor_2501, retro_rnor_2502, retro_rnor_2503, retro_rnor_478,
Sarcophilus harrisii ENSSHAG00000015970 ortholog_one2many 1 retrogene
retro_shar_72,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_652 62.45 94.12
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Download FASTA sequences of all ENSCAFG00000029620 retrocopies