RetrogeneDB ID: retro_mluc_2005

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429983:1392057..1392498(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SRSF7
• Ensembl ID: ENSMLUG00000009536
• Aliases: None
• Description: None

Sequence

>retro_mluc_2005
ATGCCTCGGAGATCTCGTTTGGATAGACCACCTGCCCGACATCCCTTTGATCCAAGTGATAGATGCTATGAGTGTGGTGA
AAAGGGACATTATGTTTATGATTGTCATCGCTATAGCCGACGAAGAAGAAGCAGGTCACGGTCTAGATCATATTCGAGAT
CCAGAGGTAGACGATATTCTCGCTCACGGAGCAGGAGCAGGGGAAGGAGGTCGAGATCAGCATCTCCTCGACGATCAAGA
TCTGTATCTCTTCGTAGATCACCATCCGCTTCACTCAGACGATCTAGATCTGGTTCTATAAAAGGATCGAGATCACGATC
AAGATCCAGGTCTATTTCACGACCAAGAAGCAGCCGATCAAAGTCCAGATCTCCATCTCCAAAAAGAAGTCGTTCCCCAT
CAGGAAGTCCAAGAAGAAGTGCAAGTCCTGAAAGAGTGGAC

Alignment

ORF - retro_mluc_2005 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.82 %
• Parental protein coverage: 64.71 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPRRSRLDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRR
          MPRRSRLDRPPAR.PFDP.DRCYECGEKGHY.YDCHRYSRRRRSRSRSRS.SRSRGRRYSRSRSRSRGRR
Retrocopy MPRRSRLDRPPARHPFDPSDRCYECGEKGHYVYDCHRYSRRRRSRSRSRSYSRSRGRRYSRSRSRSRGRR

Parental  SRSASPRRSRSVSLRRSRSASLRRSRSGSIKGSRYFQSRSRSRSRSRSISRPRSSRSKSRSPSPKRSRSP
          S.................SASLRRSRSGSIKGSR...SRSRSRS....ISRPRSSRSKSRSPSPKRSRSP
Retrocopy SXXXXXXXXXXXXXXXXPSASLRRSRSGSIKGSR---SRSRSRS----ISRPRSSRSKSRSPSPKRSRSP

Parental  SGSPRRSASPERVD
          SGSPRRSASPERVD
Retrocopy SGSPRRSASPERVD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2005 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 30 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000015988	1 retrocopy	retro_amel_1025,
Canis familiaris	ENSCAFG00000029620	1 retrocopy	retro_cfam_652,
Dasypus novemcinctus	ENSDNOG00000007821	2 retrocopies	retro_dnov_317, retro_dnov_829,
Macropus eugenii	ENSMEUG00000016459	1 retrocopy	retro_meug_1048,
Myotis lucifugus	ENSMLUG00000009536	2 retrocopies	retro_mluc_2005 , retro_mluc_972,
Myotis lucifugus	ENSMLUG00000010671	6 retrocopies	retro_mluc_1205, retro_mluc_1312, retro_mluc_1554, retro_mluc_2283, retro_mluc_278, retro_mluc_51,
Myotis lucifugus	ENSMLUG00000011040	1 retrocopy	retro_mluc_307,
Monodelphis domestica	ENSMODG00000008669	1 retrocopy	retro_mdom_289,
Mus musculus	ENSMUSG00000024097	1 retrocopy	retro_mmus_3288,
Otolemur garnettii	ENSOGAG00000010169	2 retrocopies	retro_ogar_3467, retro_ogar_3481,
Rattus norvegicus	ENSRNOG00000027360	11 retrocopies	retro_rnor_1535, retro_rnor_1977, retro_rnor_1984, retro_rnor_2419, retro_rnor_2420, retro_rnor_2421, retro_rnor_2495, retro_rnor_2501, retro_rnor_2502, retro_rnor_2503, retro_rnor_478,
Sarcophilus harrisii	ENSSHAG00000015970	1 retrocopy	retro_shar_72,