Parental gene:

EIF2A, ENSCJAG00000001199

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:17:26600139..26643788(-)


>ENSCJAG00000001199
GTGAACTCTCACCCGAGTGGTTTCTCTTTCCGGGACAATATGGCGCCGTCCACGCCGCTCTTGACAGTCCGGGGATCAGA
AGGACTGTACATGGTGAATGGACCACCACATTTTACAGAAAGCACAGTGTTTCCAAGGGAATCTGGGAAGAATTGCAAAG
TCTATACCTTTAGTAAGGATGGAACCTTGTTTGCCTGGGGCAATGGAGAAAAAGTAAATATTATCAATGTCACTAACAAG
GGACTACTCCACTCCTTCAACCTCCCAAAGGCAGTTTGCCTTGAATTCTCACCAAAAAACACTGTCCTGGCAACGTGGCA
GCCTTATACCACTTCTAAAGATGGCACAGCTGGGATACCCAACCTACAACTTTATGATGTGAAAACTGGGACATGTTTGA
AATCTTTCATCCAGAAAAAAATGCAAAATTGGTGTCCATCCTGGTCAGAAGATGAAACTCTTTGTGCCCGCAATGTTAAC
AATGAAGTTCACTTCTTTGAAAACAACAATTTTAACACAATTGCAAATAAATTGCATTTGCAAAAAATTAATGATTTCGT
ATTATCACCTGGACCACAACCATACAAGGTGGCCGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTTAGATTAT
ATCAGTACCCCAACTTCGCTGGACCTCATGCAGCTTTAGCTAATAAAAGTTTCTTTAAGGCTGATAAGGTTACAATGCTG
TGGAATAAAAAAGCTACTGCTGTGTTGGTGATAGCTAGTACAGAGGTTGACAAGACAGGAGCTTCCTACTATGGAGAACA
AACTCTGCACTACATCGCAACAAATGGAGAAAGTGCTGTAGTACAATTACCAAAAAATGGCCCCATTTATGATGTAGTTT
GGAATTCTAGTTCTACTGAGTTTTGTGCTGTTTATGGTTTTATGCCTGCCAAAGCGACAATTTTCAACTTGAAATGTGAT
CCTGTATTTGACTTTGGAACTGGTCCTCGTAATGCAGCCTACTATAGCCCTCATGGACATATATTAGTATTAGCTGGATT
TGGAAATCTGAGAGGACAAATGGAAGTGTGGGATGTGAAAAACTACAAACTTATTTCTAAACCAGTGGCTTCTGATTCTA
CATATTTTGCTTGGTGCCCGGATGGTGAGCATATTTTAACAGCCACATGTGCTCCCAGATTACGGGTTAATAATGGATAC
AAAATTTGGCATTATACTGGCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTATGGCAGGTTTCTTGGCA
GCCATTTTTGGATGGAATATTTCCAGCAAAAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAGGAGCCTA
AAGTTGCAACAGCTTATAGACCTCCAGCTTTAAGAAATAAACCAATCACCAATTCTAAACTGCATGAAGAGGAACCACCT
CAGAATATGAAACCACAATCAGGAAATGATAAGCCATTATCAAAAACAGCTCTTAAAAATCAAAGGAAGCATGAAGCTAA
GAAAGCTGCAAAGCAGGAAGCAAGAAGTGACAAGAGTCCAGATTTGACACCTACTCCTGCCCCACAGAGCACACCACGAA
GCACTATCTCTCAGTCAATTTCTGGGGATCCTGAGATAGACAAAAAAATCAAGAACCTAAAGAAGAAACTGAAAGCAATT
GAACAACTGAAAGAACAAGCAGCAACTGGAAAACAGCTAGAAAAAAATCAGTTGGAGAAAATTCAAAAAGAAACAGCCCT
TCTCCAGGAGCTGGAAGATTTGGAACTTGGTATTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 34 .10 RPM
SRP051959_skeletal_muscle 59 .62 RPM
SRP051959_lymph_node 33 .06 RPM
SRP051959_lung 28 .87 RPM
SRP051959_liver 66 .43 RPM
SRP051959_kidney 34 .61 RPM
SRP051959_heart 35 .68 RPM
SRP051959_colon 28 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000014002 ortholog_one2one 1 retrogene
retro_dnov_1148,
Homo sapiens ENSG00000144895 ortholog_one2one 1 retrogene
retro_hsap_565,
Gorilla gorilla ENSGGOG00000015391 ortholog_one2one 1 retrogene
retro_ggor_509,
Loxodonta africana ENSLAFG00000003767 ortholog_one2one 1 retrogene
retro_lafr_502,
Macaca mulatta ENSMMUG00000017696 ortholog_one2one 1 retrogene
retro_mmul_2395,
Nomascus leucogenys ENSNLEG00000003219 ortholog_one2one 1 retrogene
retro_nleu_2213,
Oryctolagus cuniculus ENSOCUG00000016095 ortholog_one2one 3 retrogenes
retro_ocun_1771, retro_ocun_1825, retro_ocun_1861,
Pongo abelii ENSPPYG00000029636 ortholog_one2one 2 retrogenes
retro_pabe_517, retro_pabe_652,
Pan troglodytes ENSPTRG00000015528 ortholog_one2one 1 retrogene
retro_ptro_423,
Ictidomys tridecemlineatus ENSSTOG00000003374 ortholog_one2one 1 retrogene
retro_itri_1706,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_968 62.25 66.39
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Download FASTA sequences of all ENSCJAG00000001199 retrocopies