Parental gene:

ENSCJAG00000011384

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:11:107206346..107217912(+)


>ENSCJAG00000011384
ATGAGTCGTCGGTCAGATACCCTTCCTGTGCCCTCTGGCCAGACGAGAAGCCAGGTCCTCAGAGACCAGAGCATCTATAC
CCAGCTGTTGGAGGTGATGTGGCACTTGCAGCAGACCATGAGGGAGCACTTTGTGCAGCTGATGAGCAGGCAGGGCCTGC
TGCAGGAACGGAGGCACATCCAGGCCATCCGTGAGCAGGAAGCCCTCCTAAGTCGCTTACTGTGCCAGATGATCAACCTC
CTACAGTCTGGGGCCACGAGTGGCCTGGAGCCCCAACCCCTTTCTTCTGAGGACTCTAGGGGTGATGTCAGATATGGGCA
GGGGACCCAACTAGCTGGGCAGCCTGATCCAGTTCCCCAACTGAGTGATTGTGAAGCTACCTTTGTCACTCGTGACCTGT
CCAACCGTGGGACTGACATCTCTGCCCTCTATTGGTCGAGCTTCCAGGACTATAATGCCTACCAAAAAGACAAATATCAT
AAGGATAAGAACCCCTTGGGCTTCATTAACCTTGGCACCAGTGAGAACAAGCTCTGCATTGACCTGATGGCTGAAAGATT
GCAAGAAAGTGACATGAACTGCGTTGAGGAGGCCTTGCTGCAGTACCCTGATTGGAGAGGGCAGCCGTTCCTGCGGGAAG
AAGTGGCCCGGTTCCTGACCTACTACTGCAGGGCACCTGCCCCACTTGATCCAGAAAACGTGGTTGTTCTAAATGGCTGC
TGCTCTGTCTTCTCTGCCCTGGCCATGGTTCTGTGTGACCCAGGCGAGGCCTTCCTGGTCCCCACTCCCTTCTATGGTGG
TTTTGCCTTTAGCTCCCGCCTGTACGCCAAGGTTGAGTTGATTCCTGTCCACCTGGAGAGTAAGATCACTGCTATAAACA
CCTATCCTTTCCAGCTCACTGTGGACAAGTTAGAGGAAGCCCTCTTTGAAGCTAGGCTTAAGGTAAGGAGGATACGAAGG
TCTTGTATTCACTCAGTTAAAAATTCTCTGGGCCACCCAGCCTCTTCCCATAGTCTCTGCTTGATGGTTGAATGGTTAGT
CTACAGGCATGATCTACATGTGATTATAGATGAGATTTACATGCTGTCTGTGTTTGATGAATCCATCACATTCCACAGTG
TTCTGAGCATGAAAAGTTTGCCTGATCGCAACAGGACCCACGTGGTCTGGGGTACCAGTAAGGATTTTGGCATCTCTGGC
TTCCGCTTCGGTGCTCTGTACACCCACAACAAGGAGGTAGCCTCTGTGGTCAGTGCCTTCGGCTACCTCCACAGCATCTC
TGGCATCACTCAGCACAAGCTGTGTCAACTGCTCCGGAACACAGAATGGATCGACAAAGTGTACCTACCCACCAATCGCT
TCCGGCTCCGGGAAGCTCACAAATACGTCACTGCTAAGCTGAAGGCATTGGAAATCCCCTTTCACAACCGCAGCTCTGGC
CTCTATGTCTGGATCAACTTGAAAAAGTACCTGGATCCCTGTACATTTGAAGAAGAACAGCTCCTCTATCGCCGCTTCCT
GGACCACAAGCTGTTGTTATCCTGTGGCAAAGCTTACATGTGTAAGGAGCCAGGCTGGTTCTGCCTCATCTTTGCAGATG
AGCTCCCCCGGCTAAAACTGGCCATGCGTCGGTTCTGCGATGTGCTGGAGGAGCAGAAGCAGGATTTGATAGTGAAGCAG
TTGGAAGACGCAATGCGGGAGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 0 .02 RPM
SRP051959_skeletal_muscle 0 .00 RPM
SRP051959_lymph_node 0 .02 RPM
SRP051959_lung 0 .00 RPM
SRP051959_liver 0 .04 RPM
SRP051959_kidney 0 .02 RPM
SRP051959_heart 0 .00 RPM
SRP051959_colon 0 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Dipodomys ordii ENSDORG00000005058 ortholog_one2many 1 retrogene
retro_dord_340,
Equus caballus ENSECAG00000011908 ortholog_one2many 1 retrogene
retro_ecab_575,
Echinops telfairi ENSETEG00000009026 ortholog_one2many 2 retrogenes
retro_etel_1006, retro_etel_204,
Homo sapiens ENSG00000205126 ortholog_one2many 1 retrogene
retro_hsap_3553,
Myotis lucifugus ENSMLUG00000005151 ortholog_one2many 1 retrogene
retro_mluc_1235,
Nomascus leucogenys ENSNLEG00000017966 ortholog_one2many 1 retrogene
retro_nleu_2326,
Ochotona princeps ENSOPRG00000002097 ortholog_many2many 1 retrogene
retro_opri_526,
Ochotona princeps ENSOPRG00000006805 ortholog_many2many 7 retrogenes
retro_opri_1064, retro_opri_1151, retro_opri_251, retro_opri_252, retro_opri_398, retro_opri_399, retro_opri_808,
Pongo abelii ENSPPYG00000003340 ortholog_one2many 1 retrogene
retro_pabe_2934,
Pan troglodytes ENSPTRG00000028662 ortholog_one2many 1 retrogene
retro_ptro_2414,
Tupaia belangeri ENSTBEG00000016623 ortholog_one2many 1 retrogene
retro_tbel_3677,
Tursiops truncatus ENSTTRG00000002727 ortholog_one2many 1 retrogene
retro_ttru_1321,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_100 86.23 98.41
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Download FASTA sequences of all ENSCJAG00000011384 retrocopies