RetrogeneDB ID:

retro_tbel_3677

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:scaffold_148229:3539..4598(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ACCSL
Ensembl ID:ENSTBEG00000016623
Aliases:None
Description:1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like [Source:HGNC Symbol;Acc:34391]


Retrocopy-Parental alignment summary:






>retro_tbel_3677
ATGAGTCACAGGTCAGACACTTCCTCCATGTCCAGCAGCCCAACAAAGGGCCAGTTTCTCATGGGTCAGAGCATCTATGC
CCAGCTATTGAAGATGATGCAGCACTTGCAGCACATGGGGTGGGGGGATCATTTTGTACAATTGATAGCCTTGGGCATTC
AGCAGAGCCTGGCACTGGAAGGCCAGAATCACACTCAGGGCACCTGTTAGCCAGAAGCTCTCCTGGACTGCTTAATATAC
CAGATTATCAGTCTTCTACAGCGTGGGGCCATAGGTGGTCTGGGCCTCCAAGGACCTATCTGTTCCCCGGATACCAGGGA
TAATGTCAGAGGTGGGCAGAGGGCCCAATCACCTAGGCAGCCTGACCATCTAGCTTCCCAACTGTGTAATTATGAAGCTG
CATTTGTCAGCTATGACCTGTTCAACCATGGGATTGACATCTCTATCTTGTACCACTCGAGCTTCCAGGACTATGAAATT
TATCAGAGAAACAAATACCACAAGGGGGAAAGTACCTTGGGCATCATTAACCTTGGCACCAGTGAGAACAAGCTCTGCAC
TAATCTGATGACTGAAAGGTTCTGCCAGAGTGACATGAACTACATTGATAACACCCTTCTGCAATACTCTGATTGGAAAG
GCCAGCATTCCTGTGAGAAGATGTGGCCTGGTTCCTCACCTACTACTGTAAGGCACCTGTTCAATTTAATCTTGAAAATG
TGGTGGTTCTAAATGGCTACTCCTCTGTCTTCTCTGCACTGTCCATGGCTCTGAGTGACCCAGGAGAGGCCTTTTTGTTC
CATTCCCTTCTATGGTGGCTTCACTTTTAGTTCCCATCTATATGCAAAAGTTGAGCTGTTTCCTGTCCACCTGGAGAGTG
AGATCACTGATGCAAATAACTACCCTTTCCAGCTCACTGTGGACAAGTTGGAGCAAGCCTTGCTTGATACTAAACTTAAT
GAGAAAAAGGTCAGAGGCCTCGTGCTTATCAACCCTCAGAATCCTCTAGGTGACATCTCTTCCCGAGACTCTCTGAGGGA
CTACCTGGAATTTGTCAAA

ORF - retro_tbel_3677 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.87 %
Parental protein coverage: 61.65 %
Number of stop codons detected: 2
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMSHRSDTSSMPSGQTKGQVLMGQSIYTQLLKMMQHLQHMV-EDHFVQLTARRMEQSLALEDQSYTRAICK
MSHRSDTSSM.S..TKGQ.LMGQSIY.QLLKMMQHLQHM...DHFVQL.A....QSLALE.Q..T...C.
RetrocopyMSHRSDTSSMSSSPTKGQFLMGQSIYAQLLKMMQHLQHMGWGDHFVQLIALGIQQSLALEGQNHTQGTC*
ParentalQEALLDRLIRQIIELLQSGATGGLGLRGPICSPDTRDDVRGGQRARSSRQPDHLASQLHNLEAAFINYDL
.EALLD.LI.QII.LLQ.GA.GGLGL.GPICSPDTRD.VRGGQRA.S.RQPDHLASQL.N.EAAF..YDL
RetrocopyPEALLDCLIYQIISLLQRGAIGGLGLQGPICSPDTRDNVRGGQRAQSPRQPDHLASQLCNYEAAFVSYDL
ParentalSNRGVDISALYCSGFQDYETYQRSKYHEGENTLGFI-LGTSENKLCTDLMTERLCQSDMNYIDDALLQYS
.N.G.DIS.LY.S.FQDYE.YQR.KYH.GE.TLG.I.LGTSENKLCT.LMTER.CQSDMNYID..LLQYS
RetrocopyFNHGIDISILYHSSFQDYEIYQRNKYHKGESTLGIINLGTSENKLCTNLMTERFCQSDMNYIDNTLLQYS
ParentalDFQGQ-PFLREEVARFLTYYCKAPAQLNPENVVVLNGCSSVFSALAMVLSDPGEAFL-VP-TPFYGGFAF
D..GQ..FL.E.VA.FLTYYCKAP.Q.N.ENVVVLNG.SSVFSAL.M.LSDPGEAFL.VP..PFYGGF.F
RetrocopyDWKGQ<AFL*EDVAWFLTYYCKAPVQFNLENVVVLNGYSSVFSALSMALSDPGEAFL<VP<IPFYGGFTF
ParentalSSHLYAKVELFPVHLESEITDTNTHPFQLSVDKLEQALLDAKLDGKKVRGLVLINPQNPLGDIYSRDALK
SSHLYAKVELFPVHLESEITD.N..PFQL.VDKLEQALLD.KL..KKVRGLVLINPQNPLGDI.SRD.L.
RetrocopySSHLYAKVELFPVHLESEITDANNYPFQLTVDKLEQALLDTKLNEKKVRGLVLINPQNPLGDISSRDSLR
ParentalDYLEFAQ
DYLEF..
RetrocopyDYLEFVK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_3677 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_3677 was not experimentally validated.

Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 20 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000113841 retrocopy
Dipodomys ordii ENSDORG000000050581 retrocopy
Equus caballus ENSECAG000000119081 retrocopy
Echinops telfairi ENSETEG000000090262 retrocopies
Homo sapiens ENSG000002051261 retrocopy
Myotis lucifugus ENSMLUG000000051511 retrocopy
Nomascus leucogenys ENSNLEG000000179661 retrocopy
Ochotona princeps ENSOPRG000000020971 retrocopy
Ochotona princeps ENSOPRG000000068057 retrocopies
Pongo abelii ENSPPYG000000033401 retrocopy
Pan troglodytes ENSPTRG000000286621 retrocopy
Tupaia belangeri ENSTBEG00000016623 1 retrocopy
retro_tbel_3677 ,
Tursiops truncatus ENSTTRG000000027271 retrocopy



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