RetrogeneDB ID: | retro_tbel_3677 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_148229:3539..4598(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACCSL | ||
Ensembl ID: | ENSTBEG00000016623 | ||
Aliases: | None | ||
Description: | 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like [Source:HGNC Symbol;Acc:34391] |
Percent Identity: | 77.87 % |
Parental protein coverage: | 61.65 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MSHRSDTSSMPSGQTKGQVLMGQSIYTQLLKMMQHLQHMV-EDHFVQLTARRMEQSLALEDQSYTRAICK |
MSHRSDTSSM.S..TKGQ.LMGQSIY.QLLKMMQHLQHM...DHFVQL.A....QSLALE.Q..T...C. | |
Retrocopy | MSHRSDTSSMSSSPTKGQFLMGQSIYAQLLKMMQHLQHMGWGDHFVQLIALGIQQSLALEGQNHTQGTC* |
Parental | QEALLDRLIRQIIELLQSGATGGLGLRGPICSPDTRDDVRGGQRARSSRQPDHLASQLHNLEAAFINYDL |
.EALLD.LI.QII.LLQ.GA.GGLGL.GPICSPDTRD.VRGGQRA.S.RQPDHLASQL.N.EAAF..YDL | |
Retrocopy | PEALLDCLIYQIISLLQRGAIGGLGLQGPICSPDTRDNVRGGQRAQSPRQPDHLASQLCNYEAAFVSYDL |
Parental | SNRGVDISALYCSGFQDYETYQRSKYHEGENTLGFI-LGTSENKLCTDLMTERLCQSDMNYIDDALLQYS |
.N.G.DIS.LY.S.FQDYE.YQR.KYH.GE.TLG.I.LGTSENKLCT.LMTER.CQSDMNYID..LLQYS | |
Retrocopy | FNHGIDISILYHSSFQDYEIYQRNKYHKGESTLGIINLGTSENKLCTNLMTERFCQSDMNYIDNTLLQYS |
Parental | DFQGQ-PFLREEVARFLTYYCKAPAQLNPENVVVLNGCSSVFSALAMVLSDPGEAFL-VP-TPFYGGFAF |
D..GQ..FL.E.VA.FLTYYCKAP.Q.N.ENVVVLNG.SSVFSAL.M.LSDPGEAFL.VP..PFYGGF.F | |
Retrocopy | DWKGQ<AFL*EDVAWFLTYYCKAPVQFNLENVVVLNGYSSVFSALSMALSDPGEAFL<VP<IPFYGGFTF |
Parental | SSHLYAKVELFPVHLESEITDTNTHPFQLSVDKLEQALLDAKLDGKKVRGLVLINPQNPLGDIYSRDALK |
SSHLYAKVELFPVHLESEITD.N..PFQL.VDKLEQALLD.KL..KKVRGLVLINPQNPLGDI.SRD.L. | |
Retrocopy | SSHLYAKVELFPVHLESEITDANNYPFQLTVDKLEQALLDTKLNEKKVRGLVLINPQNPLGDISSRDSLR |
Parental | DYLEFAQ |
DYLEF.. | |
Retrocopy | DYLEFVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000011384 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000005058 | 1 retrocopy | |
Equus caballus | ENSECAG00000011908 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009026 | 2 retrocopies | |
Homo sapiens | ENSG00000205126 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005151 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017966 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002097 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000006805 | 7 retrocopies | |
Pongo abelii | ENSPPYG00000003340 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000028662 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016623 | 1 retrocopy |
retro_tbel_3677 ,
|
Tursiops truncatus | ENSTTRG00000002727 | 1 retrocopy |