Parental gene:

ACCSL, ENSPTRG00000028662

Aliases:None
Description:1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like [Source:HGNC Symbol;Acc:34391]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:11:44144599..44156587(+)


>ENSPTRG00000028662
ATGAGTCATCGGTCAGACACCCTTCCTGTGCCCTCTGGTCAGAGGAGAGGCCGGGTCCCCAGAGACCACAGCATCTATAC
CCAGCTGTTGGAGATAACGCTGCACTTGCAGCAGGCCATGACGGAGCACTTCGTGCAGCTGACGAGCAGACAGGGCCTGT
CGCTGGAGGAAAGGAGGCACACTGAGGCCATCTGTGAGCATGAAGCCCTTCTGAGTCGCTTAATATGCCGGATGATCAAC
CTCCTACAGTCTGGGGCCACGAGTGGCCTGGAGCTCCAAGTGCCTCTTCCTTCTGAGGACTCTAGGGGTGATGTCAGATA
TGGGCAGAGGGCCCAACTGTCTGGGCAGCCTGATCCAGTTCCCCAACTGAGTGATTGTGAAGCTGCCTTTGTCAGCCACG
ACCTATCCAACCGTGGGATTGACATCTCTGTCTTTTATCAGTCGAGCTTCCAGGACTACAATGCCTACCAAAAAGATAAA
TATCATAAGGACAAGAACACCTTGGGTTTCATTAACCTTGGCACCAGTGAGAACAAGCTCTGCATGGATCTGATGACTGA
AAGATTGCAAGAAAGTGACATGAACTGCACTGAGGACACCTTGCTTCAGTACCCTGATTGGAGAGGGCAGCCATTCCTGC
GGGAAGAAGTGGCCCGGTTCCTGACCTACTACTGCAGGGCACCTACCCGACTTGACCCAGAAAATGTGGTGGTTCTAAAT
GGCTGCTGCTCTGTCTTCTCTGCCCTGGCCATGGTTCTGTGTGATCCAGGCGAGGCCTTCCTGGTCCCTGCTCCCTTCTA
TGGTGGCTTTGCCTTTAGCTCCCGCCTGTATGCAAAGGTTGAGTTGATTCCTGTCCACCTGGAGAGTGAGGTCACTGTTA
CAAACACCCATCCTTTCCAGCTCACTGTGGACAAGTTAGAGGAAGCCCTGCTTGAAGCTAGGCTTGAGGGGAAAAAGGTC
CGAGGCCTTGTGCTAATCAACCCTCAGAATCCTCTGGGTGACATCTACTCCCCAGAGTCACTGATGAAATACCTGGAATT
TGCCAAGAGGTATAACCTACATGTGATCATAGATGAGATTTACATGCTGTCTGTGTTTGATGAATCCATCACATTCCACA
GCGTTCTGAGCATGAAAAGTTTGCCTGATAGCAACAGGACCCATGTGATCTGGGGTACCAGTAAGGATTTTGGCATCTCT
GGCTTCCGCTTTGGTGCTCTGTATACCCACAACAAGGAGGTGGCCTCTGCTGTGAGTGCCTTTGGCTACCTCCACAGTAT
TTCTGGCATCACCCAGCACAAGCTGTGTCAACTGCTCCAGAACACAGAATGGATTGACAAAGTATACGTACCCACCAATT
GCTACCGGCTCCGGGAAGCTCACAAGTACATCACTGCTGAGCTGAAGGCATTGGAGATCCCTTTTCACAACCGCAGCTCT
GGCCTCTATGTCTGGATCAACTTGAAAAAGTACCTGGATCCCTGTACATTTGAAGAAGAATGGCTCCTCTATTGCCGCTT
CCTGGACAACAAGCTATTGTTATCCCGTGGCAAAACCTACATGTGTAAGGAGCCAGGCTGGTTCCGCCTCATCTTTGCAG
ATGAGCTCCCCCGGCTAAAATTGGCCATGCGTCGGTTCTGTGATGTGCTACAGGAGCAGAAGGAGGCTTTGATAGTGAAG
CAGTTGGAGGATGCAATGAGGGAGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .00 RPM
SRP007412_cerebellum 0 .14 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .03 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000011384 ortholog_one2many 1 retrogene
retro_cjac_100,
Dipodomys ordii ENSDORG00000005058 ortholog_one2one 1 retrogene
retro_dord_340,
Equus caballus ENSECAG00000011908 ortholog_one2one 1 retrogene
retro_ecab_575,
Echinops telfairi ENSETEG00000009026 ortholog_one2one 2 retrogenes
retro_etel_1006, retro_etel_204,
Homo sapiens ENSG00000205126 ortholog_one2one 1 retrogene
retro_hsap_3553,
Myotis lucifugus ENSMLUG00000005151 ortholog_one2one 1 retrogene
retro_mluc_1235,
Nomascus leucogenys ENSNLEG00000017966 ortholog_one2one 1 retrogene
retro_nleu_2326,
Ochotona princeps ENSOPRG00000002097 ortholog_one2many 1 retrogene
retro_opri_526,
Ochotona princeps ENSOPRG00000006805 ortholog_one2many 7 retrogenes
retro_opri_1064, retro_opri_1151, retro_opri_251, retro_opri_252, retro_opri_398, retro_opri_399, retro_opri_808,
Pongo abelii ENSPPYG00000003340 ortholog_one2one 1 retrogene
retro_pabe_2934,
Tupaia belangeri ENSTBEG00000016623 ortholog_one2one 1 retrogene
retro_tbel_3677,
Tursiops truncatus ENSTTRG00000002727 ortholog_one2one 1 retrogene
retro_ttru_1321,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2414 81.57 64.44
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Download FASTA sequences of all ENSPTRG00000028662 retrocopies