Parental gene:

ACCSL, ENSECAG00000011908

Aliases:None
Description:1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like [Source:HGNC Symbol;Acc:34391]
Organism:Horse (Equus caballus)
Coordinates:12:8924681..8934247(+)


>ENSECAG00000011908
ATGAGTCACCAATCAGACGTCCTGCCCTGTGACCAGCTGAGGGACCAGGTCATCGGAAACCAGAGCAGCCACACCCAGCT
GATGGAGACGCTGCTGCACCTGCGGCAGACCGTAGACGATTGTATCACACAGCTGACGACCAGGCCCCCACAGCTGGACC
TGCCGCTGGAGGAGCAGAGGCACAATCAGGCCACCGGCGAGCAGGAAGCCTTCCTGCGCCGGGTGGTCAACCTCCTCCAG
TCTGGGGCCATGTGGGGCCTGGGGCTCCAAGCGCCTCGCCCTACCCTGGGCCCTAGGGATGATGCTGGAGGCGGGCAGCA
GGCACAGCTGTCCAGGCAGCTTGACCAGCTAGTTCACCAACTGAGTCATCTGGAAGTTGCATTTGTCAGCCATGACCTGT
CCAACCGTGGGATTGACATCTCTGCCTTCGAGCGCTCCAAATTCCAGGACTTCAAGACCTACCAAGGAGACAAATACCAT
GAGGACAAGAACACCATGGGCTTCATCAACCTCGGTGTCAGTGAGAACAAGCTGTGCACTGATCTGATGACCGAAAGGTT
GAGTCGGAGTGACATGAACCACCTTGAGGATGCCCTGCTGCAATATTCTGACCAGAGAGGGCAACCATTCCTGCGGGAAG
AAGTGGCCCGCTTCTTGACCTACTATTGCAAGTCACCTGCCCGCCTTGATCCGGAAAACGTGGTTGTTCTAAGTGGCTGC
TGCTCTGTCTTCTCCGCGCTGGCCACGGTTCTGTGTGATCCAGGTGAGGCCTTGCTGACCCCCACCCCCTTCTTTGGTGG
CCTCGTCATGGGTTCGTACCTGTATTCGAAAGTTGAGCTGATGCCTGTCCACCTGGACAGTGAGATCACTGATGGGAGCG
CCCGTCCATTCCAGCTCACTGTGGACAAGTTGGAGCAGGCCCTGCTTGAGGCCACGCTTAAGGGGAAAAAGGTCAGAGGC
CTTTTGCTAATCAATCCTCAGAATCCCCTGGGAGATGTCTACTCTAGAGACTCACTGGAGGAATACCTGGAATTTGCCAA
GAGGTACAACCTACATGTGATCATAGATGAGCTGTACATGCTGTCTGTGTTTGATGACTCCGTCACCTTCCACAGTGTTC
TGAGCATGGAAAGTTTGCCTGACCCCAACAGAACCCACATGATCTGGGGCACCAGTAAGGATTTTGGCATCTCTGGCTTC
CGCTTTGGTGCTCTGTACACCCACAACAAGGAGGTGGCCTCCGCTGTGAGCTCTTTTGGCTTCCTCAATGGCATCTCTGG
GATCACCCAGTACAAGCTGTGTCGGCTGCTCCAGGACAGAGAATGGATTGACAAAGTGTACCTGCCCACTAATCACTCTC
GGCTGAAGGCAGCTCACAGGTACATCACCAACAAGTTGAAGGCGTTGAAGATCCCCTTTCTCAATCGTGGTTCGGGCCTC
TATGTCTGGATGAACTTGAAAGAGTACCTGCAACCATGTACCTTTGAGGAAGAGCTGCTCCTCCATCACCGTTTCTTGGG
CAACAAGCTGATACTGTCCCCTGGCAAGACCTACATGTGTAAGGAGCCTGGCTGGTTCCGCCTCATCTTTTCGGATAAGC
CCCTCCCGTTAAAACTTGCCATGCATCGGTTCTATGAGGTGCTCGCGGAGCAGAAGCGGGATCTGAGAGTGAAGCAACTG
GAGGATCCACAGAAGGAGTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 0 .05 RPM
SRP021940_embryo 0 .10 RPM
SRP021940_cerebellum 0 .00 RPM
SRP021940_testis 0 .13 RPM
SRP021940_placental_villous 27 .47 RPM
SRP021940_articular_cartilage 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000011384 ortholog_one2many 1 retrogene
retro_cjac_100,
Dipodomys ordii ENSDORG00000005058 ortholog_one2one 1 retrogene
retro_dord_340,
Echinops telfairi ENSETEG00000009026 ortholog_one2one 2 retrogenes
retro_etel_1006, retro_etel_204,
Homo sapiens ENSG00000205126 ortholog_one2one 1 retrogene
retro_hsap_3553,
Myotis lucifugus ENSMLUG00000005151 ortholog_one2one 1 retrogene
retro_mluc_1235,
Nomascus leucogenys ENSNLEG00000017966 ortholog_one2one 1 retrogene
retro_nleu_2326,
Ochotona princeps ENSOPRG00000002097 ortholog_one2many 1 retrogene
retro_opri_526,
Ochotona princeps ENSOPRG00000006805 ortholog_one2many 7 retrogenes
retro_opri_1064, retro_opri_1151, retro_opri_251, retro_opri_252, retro_opri_398, retro_opri_399, retro_opri_808,
Pongo abelii ENSPPYG00000003340 ortholog_one2one 1 retrogene
retro_pabe_2934,
Pan troglodytes ENSPTRG00000028662 ortholog_one2one 1 retrogene
retro_ptro_2414,
Tupaia belangeri ENSTBEG00000016623 ortholog_one2one 1 retrogene
retro_tbel_3677,
Tursiops truncatus ENSTTRG00000002727 ortholog_one2one 1 retrogene
retro_ttru_1321,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_575 65.22 83.75
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSECAG00000011908 retrocopies