Parental gene:

AKR1D1, ENSCJAG00000012872

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:8:108032810..108074359(-)


>ENSCJAG00000012872
ATGGATCTCAGTGCTGCAAGTCACCGCATACCTCTAAGTGATGGAAACAGCATTCCCATCATCGGACTTGGTACCTACTC
AGAACCTAAATCAACCGCTAAGGGAGCCTGTGCGATATCGGTGAAGCTTGCTATCGACTTAGGGTACCGACACTTCGATG
GGGCCTACGTCTACAAAAACGAACACGAAGTTGGGGAGGCCATCAGGGAGAAGATAGCAGAAGGAAAGGTGCAGAGGGAA
GATATCTTCTACTGTGGAAAGCTATGGGCTACAAATCATGTCCCAGAGATGGTCCGCCCAACCCTGGAGAGGACACTCAG
GGTCCTCCAGCTAGATTACGTGGATCTTTACATCATTGAATTACCCATGGCCTTTAAGCCAGGAGATGAAGTATATCCTA
GAGATGAGAATGGCAAATGGTTATATCACAAGTCAAATCTGTGCGCCACTTGGGAAGCTATGGAAGCTTGCAAAGATGCT
GGCTTGGTGAAATCCCTGGGAGTGTCCAATTTTAACCGCAGGCAACTGGAGCTCATCCTGAACAAGCCGGGACTCAAACA
CAAGCCAGTCAGCAACCAGGTTGAGTGCCATCCATATTTCACCCAGCCAAAACTCCTGAAATTTTGCCAACAACATGACA
TCGTCATTATTGCATATAGCCCTTTGGGGACCAGTAGGAATCCATTCTGGGTGGATGTTTCTATTCCTCCTTTGTTAAAG
GATACACTTCTAAACTCATTGGGGAAAAAGTACAATAAGACAGCAGCTCAAATTGTTTTGCGTTTTAACATCCAGCGAGG
GGTGGTTGTCATTCCTAAAAGCTTCAATCCTAAAAGGATCAAAGAAAATTTTCAGATCTTTGACTTCTCTCTCACTGAAG
AAGAAATGAAGGATATTGAAGCCTTGAATAAAAATGTCCGCTTTGTGCAATTGCTCATGTGGCGTGATCATCCTGAATAC
CCATTTCATGAGGAATACTGA

Library Parental gene expression (RPM)
SRP051959_colon 0 .02 RPM
SRP051959_heart 0 .04 RPM
SRP051959_kidney 0 .18 RPM
SRP051959_liver 84 .54 RPM
SRP051959_lung 0 .05 RPM
SRP051959_lymph_node 0 .00 RPM
SRP051959_skeletal_muscle 0 .00 RPM
SRP051959_spleen 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000012231 other_paralog 14 retrogenes
retro_cjac_1140, retro_cjac_1167, retro_cjac_1718, retro_cjac_1973, retro_cjac_2550, retro_cjac_3102, retro_cjac_3143, retro_cjac_3297, retro_cjac_3692, retro_cjac_3840, retro_cjac_3872, retro_cjac_3910, retro_cjac_476, retro_cjac_621,
Callithrix jacchus ENSCJAG00000012250 other_paralog 1 retrogene
retro_cjac_3038,
Callithrix jacchus ENSCJAG00000013633 other_paralog 2 retrogenes
retro_cjac_3093, retro_cjac_3334,
Homo sapiens ENSG00000122787 ortholog_one2one 1 retrogene
retro_hsap_257,
Gorilla gorilla ENSGGOG00000014684 ortholog_one2one 1 retrogene
retro_ggor_307,
Nomascus leucogenys ENSNLEG00000013710 ortholog_one2one 1 retrogene
retro_nleu_860,
Pongo abelii ENSPPYG00000018037 ortholog_one2one 1 retrogene
retro_pabe_406,
Pan troglodytes ENSPTRG00000019740 ortholog_one2one 1 retrogene
retro_ptro_217,
Rattus norvegicus ENSRNOG00000013004 ortholog_one2one 1 retrogene
retro_rnor_2559,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1688 67.24 68.71
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Download FASTA sequences of all ENSCJAG00000012872 retrocopies