Parental gene:

ENSCJAG00000012250

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:8:111603540..111617782(-)


>ENSCJAG00000012250
ATGGCCACCTTTGTGGAGCTCAGTACCAAAGCTAAAATGCCCATTGTGGGCCTGGGCACTTGGAAGTCTCCTGTTGGCAA
AGTGAAAGAAGCTGTGAAGGTGGCCATTGACGCAGGATATCGCCACATTGACTGTGCCTATGTGTATCAGAATGAGCATG
AAGTTGGGGAAGCCATCCAAGAGAAGATCCAAGAGAAGGCTGTGAAGCGGGAGGACCTCTTCATTGTCAGCAAGGTGCAA
GTGGCGCATTTGTTGTGGGCCACTTTCTTTGAGAGACCCTTGGTGAGAAAAGCCTGTGAGAAGACCCTCAAGGACCTGAA
ACTGAGCTATCTAGACGTCTATCTTATTCACTGGCCACAAGGATTCAAGAGCTTGAAAAAGTGGTATGCAGTTGTGGTAT
TTAGCAAGAGGCAGGATCCTGAAACCTTGTTGAATAGAACCTGCCCTGATGCAGATTCCAGTCAACTTTGTATTCTGTAT
TTACAGTCTGGGGACGACATTCTTCCCAAAGATGATGAAGGTAAAGTGATCGCTGGAAAAGCAACATTCTTGGATGCCTG
GGAGGCCATGGAGGAGCTGGTGGATGCGGGTCTGGTGAAAGCCCTTGGGATCTCCAATTTCAACCACTTCCAGATTGAGA
GGCTCTTGAACAAACCTGGACTGAAATATAAACCAGTGACTAACCAGGTTGAGTGTCACCCCTACCTCACGCAGGAGAAA
TTGATCCAGTACTGCCACTCCAAGGGCATCACCATTACAGCCTACAGCCCCCTGGGCTCTCCGGATAGACCTTGGGCCAA
GCCAGAGGACCCTTCTCTACTGGAAGATCCCAAGATTAAGGAGATTGCTGCAAAGCACAAAAAAACTGCAGCCCAGGTTC
TGATCCGTTTCCATATCCAGAGGAATGTGATTGTGATCCCCAAGTCTGTCACACCAGCACGCATTGTTGAGAACATTCAG
GTCTTTGACTTTAAACTGAGTGATCAGGAGATGGCAACGATACTCAGCTTCAACAGAAACTGGAGGGCCTGTAACATACA
GCACTCCGTTCATTTGGAGGAACATCCCTTTAATGCAGAATATTGA

Library Parental gene expression (RPM)
SRP051959_colon 27 .29 RPM
SRP051959_heart 6 .35 RPM
SRP051959_kidney 3 .99 RPM
SRP051959_liver 210 .67 RPM
SRP051959_lung 3 .69 RPM
SRP051959_lymph_node 1 .39 RPM
SRP051959_skeletal_muscle 7 .25 RPM
SRP051959_spleen 3 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000166 ortholog_one2one 1 retrogene
retro_chof_400,
Callithrix jacchus ENSCJAG00000012231 within_species_paralog 14 retrogenes
retro_cjac_1140, retro_cjac_1167, retro_cjac_1718, retro_cjac_1973, retro_cjac_2550, retro_cjac_3102, retro_cjac_3143, retro_cjac_3297, retro_cjac_3692, retro_cjac_3840, retro_cjac_3872, retro_cjac_3910, retro_cjac_476, retro_cjac_621,
Callithrix jacchus ENSCJAG00000012872 other_paralog 1 retrogene
retro_cjac_1688,
Callithrix jacchus ENSCJAG00000013633 within_species_paralog 2 retrogenes
retro_cjac_3093, retro_cjac_3334,
Erinaceus europaeus ENSEEUG00000004422 ortholog_one2many 1 retrogene
retro_eeur_681,
Echinops telfairi ENSETEG00000006005 ortholog_one2one 3 retrogenes
retro_etel_1055, retro_etel_1643, retro_etel_748,
Homo sapiens ENSG00000198074 ortholog_one2many 1 retrogene
retro_hsap_581,
Macaca mulatta ENSMMUG00000013098 ortholog_one2many 2 retrogenes
retro_mmul_1357, retro_mmul_2455,
Mus musculus ENSMUSG00000029762 ortholog_one2many 1 retrogene
retro_mmus_627,
Mus musculus ENSMUSG00000052131 ortholog_one2many 1 retrogene
retro_mmus_2860,
Mus musculus ENSMUSG00000061758 ortholog_one2many 1 retrogene
retro_mmus_1490,
Nomascus leucogenys ENSNLEG00000013088 ortholog_one2one 1 retrogene
retro_nleu_801,
Pongo abelii ENSPPYG00000018018 ortholog_one2one 1 retrogene
retro_pabe_606,
Pan troglodytes ENSPTRG00000019718 ortholog_one2many 1 retrogene
retro_ptro_428,
Rattus norvegicus ENSRNOG00000009734 ortholog_one2many 3 retrogenes
retro_rnor_2380, retro_rnor_2588, retro_rnor_657,
Sorex araneus ENSSARG00000001396 ortholog_one2one 1 retrogene
retro_sara_608,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3038 87.63 87.97
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Download FASTA sequences of all ENSCJAG00000012250 retrocopies