Parental gene: | ENSCJAG00000012231 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 8:111681084..111695740(+) |
>ENSCJAG00000012231
ATGGCGGGCCACCTCGTGCTCTACAACGGCGCCAAGATGCCCATCCTCGGGCTGGGCACCTGGAAGTCCCCTCCAGGCCA
AGTGACCGAGGCTGTGAAGGTGGCCATCGACGTTGGGTACCGCCACATCGACTGTGCCCATGTGTACCACAATGAGAATG
AGGTGGGGGTAGCCATTCAGGAGAAGCTCAAGGAGCAGGTGGTAAAGCGTGAGGAGCTGTTCATCGTCAGCAAGCTGTGG
TGCACGTACCATGAGAAGGGCCTGGTGAAAGGAGCCTGCCTGAAGACGCTCAGCGACCTGAAGCTGGACTACCTGGACCT
CTACCTTATTCACTGGCCAACTGGCTTTAAGCCTGGGAAGGAATTTTTCCCATTGGATGAGTCAGGCAACGTGATTCCCA
GTGACACCAACATTCTGGACACGTGGGCGGCCATGGAAGAACTGGTGGATGAAGGGCTGGTGAAAGCTATTGGCATCTCC
AACTTCAACCATCTCCAGGTGGAGAGGATCTTAAACAAACCTGGCTTAAAGTATAAGCCTGCAGTTAACCAGATTGAGTG
CCACCCATACCTCACTCAGGAGAAGTTAATCCAGTACTGCCAGTCCAAAGGCATCGTGGTGACCGCCTACAGCCCCCTAG
GCTCTCCCGACAGGCCCTGGGCCAAGCCCGAGGACCCTTCCCTCCTGGAGGATCCCAGGATCAAGGCGATCGCAGACAAG
CACAATAAAACCACAGCTCAGGTGCTGATCCGGTTCCCCATGCAGAGGAACTTGGTGGTGATCCCCAAGTCTGTGACACC
AGAACGCATTGCTGAGAACTTTAAGGTCTTTGACTTTGAACTGAGCAGCGAGGATATGACCACCTTACTCGGCTACAACA
GGAACTGGAGGGTCTGTGCCTTGATGAGCGCTGTCTCCCACAAGGATTACCCCTTCCATGAAGAGTTTTGA
ATGGCGGGCCACCTCGTGCTCTACAACGGCGCCAAGATGCCCATCCTCGGGCTGGGCACCTGGAAGTCCCCTCCAGGCCA
AGTGACCGAGGCTGTGAAGGTGGCCATCGACGTTGGGTACCGCCACATCGACTGTGCCCATGTGTACCACAATGAGAATG
AGGTGGGGGTAGCCATTCAGGAGAAGCTCAAGGAGCAGGTGGTAAAGCGTGAGGAGCTGTTCATCGTCAGCAAGCTGTGG
TGCACGTACCATGAGAAGGGCCTGGTGAAAGGAGCCTGCCTGAAGACGCTCAGCGACCTGAAGCTGGACTACCTGGACCT
CTACCTTATTCACTGGCCAACTGGCTTTAAGCCTGGGAAGGAATTTTTCCCATTGGATGAGTCAGGCAACGTGATTCCCA
GTGACACCAACATTCTGGACACGTGGGCGGCCATGGAAGAACTGGTGGATGAAGGGCTGGTGAAAGCTATTGGCATCTCC
AACTTCAACCATCTCCAGGTGGAGAGGATCTTAAACAAACCTGGCTTAAAGTATAAGCCTGCAGTTAACCAGATTGAGTG
CCACCCATACCTCACTCAGGAGAAGTTAATCCAGTACTGCCAGTCCAAAGGCATCGTGGTGACCGCCTACAGCCCCCTAG
GCTCTCCCGACAGGCCCTGGGCCAAGCCCGAGGACCCTTCCCTCCTGGAGGATCCCAGGATCAAGGCGATCGCAGACAAG
CACAATAAAACCACAGCTCAGGTGCTGATCCGGTTCCCCATGCAGAGGAACTTGGTGGTGATCCCCAAGTCTGTGACACC
AGAACGCATTGCTGAGAACTTTAAGGTCTTTGACTTTGAACTGAGCAGCGAGGATATGACCACCTTACTCGGCTACAACA
GGAACTGGAGGGTCTGTGCCTTGATGAGCGCTGTCTCCCACAAGGATTACCCCTTCCATGAAGAGTTTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 55 .65 RPM |
| SRP051959_skeletal_muscle | 24 .87 RPM |
| SRP051959_lymph_node | 16 .94 RPM |
| SRP051959_lung | 16 .95 RPM |
| SRP051959_liver | 9 .40 RPM |
| SRP051959_kidney | 20 .59 RPM |
| SRP051959_heart | 19 .91 RPM |
| SRP051959_colon | 8 .36 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000009902 | ortholog_many2many | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000001290 | ortholog_many2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000012250 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000012872 | other_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000013633 | within_species_paralog | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000011358 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000085662 | ortholog_one2many | 7 retrogenes | |
| Gorilla gorilla | ENSGGOG00000011731 | ortholog_one2many | 6 retrogenes | |
| Macropus eugenii | ENSMEUG00000003434 | ortholog_one2many | 6 retrogenes | |
| Microcebus murinus | ENSMICG00000001921 | ortholog_one2many | 2 retrogenes | |
| Mus musculus | ENSMUSG00000001642 | ortholog_one2many | 10 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013037 | ortholog_one2many | 7 retrogenes | |
| Otolemur garnettii | ENSOGAG00000016156 | ortholog_one2many | 2 retrogenes | |
| Procavia capensis | ENSPCAG00000016195 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000018017 | ortholog_one2many | 8 retrogenes | |
| Pan troglodytes | ENSPTRG00000019716 | ortholog_one2many | 6 retrogenes | |
| Rattus norvegicus | ENSRNOG00000009513 | ortholog_many2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000013327 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_476 | 97.47 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_621 | 94.27 | 71.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1140 | 94.03 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1167 | 84.80 | 64.24 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_1718 | 75.83 | 75.32 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_1973 | 98.74 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_2550 | 85.22 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cjac_3102 | 97.15 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cjac_3143 | 98.42 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_cjac_3297 | 93.84 | 92.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_cjac_3692 | 94.48 | 56.01 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_cjac_3840 | 85.71 | 72.15 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_cjac_3872 | 97.47 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_cjac_3910 | 85.20 | 69.62 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000012231 retrocopies