Parental gene:

CDK5, ENSCJAG00000020258

Aliases:None
Description:cyclin-dependent kinase 5 [Source:HGNC Symbol;Acc:1774]
Organism:Marmoset (Callithrix jacchus)
Coordinates:8:95754353..95758486(+)


>ENSCJAG00000020258
ATGCAGAAATACGAGAAACTGGAAAAGATTGGAGAAGGCACCTACGGAACAGTGTTCAAGGCCAAAAATCGGGAGACGCA
TGAGATCGTGGCTCTGAAACGGGTGAGGTTGGATGACGATGATGAGGGTGTGCCGAGTTCAGCCCTCCGGGAGATCTGCT
TACTCAAGGAGCTGAAGCACAAGAACATCGTCAGGCTTCATGATGTCCTGCACAGTGACAAGAAGCTAACTTTGGTTTTT
GAATTCTGTGACCAGGACCTGAAGAAGTATTTTGACAGTTGCAATGGTGACCTCGATCCTGAGATTGTAAAGTCATTCCT
CTTCCAGCTGCTAAAAGGCCTGGGATTCTGTCATAGCCGCAATGTGCTGCACAGGGACCTGAAGCCCCAGAACCTGCTAA
TCAACAGGAATGGGGAGTTGAAATTAGCTGATTTCGGCCTGGCTCGAGCCTTTGGGATCCCTGTCCGCTGTTACTCAGCT
GAGGTGGTTACACTGTGGTACCGCCCACCGGACGTCCTCTTTGGGGCCAAGCTGTACTCCACGTCCATCGACATGTGGTC
AGCCGGCTGCATCTTTGCAGAGCTGGCCAATGCTGGGCGGCCTCTCTTTCCCGGCAATGATGTTGATGACCAGTTAAAGA
GGATCTTCCGGCTGCTGGGGACGCCCACCGAGGAACAGTGGCCCTCCATGACCAAGCTGCCAGACTACAAGCCCTACCCG
ATGTACCCGGCCACAACATCCCTGGTGAACGTCGTGCCCAAACTCAATGCCACAGGGAGGGACCTGCTGCAGAACCTTCT
GAAGTGTAACCCTGTCCAACGTATCTCAGCAGAAGAGGCCCTGCAGCACCCCTACTTCTCCGACTTCTGTCCGCCCTAG

Library Parental gene expression (RPM)
SRP051959_colon 2 .64 RPM
SRP051959_heart 2 .67 RPM
SRP051959_kidney 4 .46 RPM
SRP051959_liver 3 .03 RPM
SRP051959_lung 3 .24 RPM
SRP051959_lymph_node 3 .45 RPM
SRP051959_skeletal_muscle 2 .77 RPM
SRP051959_spleen 3 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006697 other_paralog 3 retrogenes
retro_cjac_2163, retro_cjac_2891, retro_cjac_2951,
Callithrix jacchus ENSCJAG00000007001 other_paralog 2 retrogenes
retro_cjac_1846, retro_cjac_671,
Callithrix jacchus ENSCJAG00000012261 within_species_paralog 1 retrogene
retro_cjac_961,
Callithrix jacchus ENSCJAG00000014175 within_species_paralog 1 retrogene
retro_cjac_4070,
Homo sapiens ENSG00000164885 ortholog_one2one 1 retrogene
retro_hsap_4002,
Gorilla gorilla ENSGGOG00000016879 ortholog_one2one 1 retrogene
retro_ggor_2686,
Nomascus leucogenys ENSNLEG00000004100 ortholog_one2one 1 retrogene
retro_nleu_549,
Pongo abelii ENSPPYG00000018183 ortholog_one2one 1 retrogene
retro_pabe_3290,
Pan troglodytes ENSPTRG00000019872 ortholog_one2one 1 retrogene
retro_ptro_2717,
Ictidomys tridecemlineatus ENSSTOG00000016068 ortholog_one2one 1 retrogene
retro_itri_906,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1522 83.96 99.66
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Download FASTA sequences of all ENSCJAG00000020258 retrocopies