RetrogeneDB ID: | retro_ggor_2686 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 8:122454310..122455186(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDK5 | ||
Ensembl ID: | ENSGGOG00000016879 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.1 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVL |
MQKY.KLEKIGE.TYGTVFKAKNRETHEIVALK.VRLDD.DEGVPSSALREICLLKELK.KNI.RLHDVL | |
Retrocopy | MQKYKKLEKIGEATYGTVFKAKNRETHEIVALKWVRLDDNDEGVPSSALREICLLKELKYKNIIRLHDVL |
Parental | HSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGEL |
HSDKKLTLVF.FC.Q.LKKYFDSCNGDLD.EIVKSFLFQLLKGLGFCHSRNVL.RDLKPQNLLINRNGEL | |
Retrocopy | HSDKKLTLVFKFCHQHLKKYFDSCNGDLDSEIVKSFLFQLLKGLGFCHSRNVLRRDLKPQNLLINRNGEL |
Parental | KLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDD |
KLADFGL.RAFGIP..CY.A.VVTLWY.PPDV.FGAKLYSTSIDMWSAGCIFAELANAG.PLFPGNDVDD | |
Retrocopy | KLADFGLYRAFGIPICCY*AGVVTLWYHPPDVFFGAKLYSTSIDMWSAGCIFAELANAGWPLFPGNDVDD |
Parental | QLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEA |
QLKRIFRLLG..T.EQWPSMTKLPDYK.YPMYPATTSLVN.VPKLNATGRDLLQNLLKCNP.Q.ISAEEA | |
Retrocopy | QLKRIFRLLGMLTKEQWPSMTKLPDYKLYPMYPATTSLVNIVPKLNATGRDLLQNLLKCNPFQCISAEEA |
Parental | LQHPYFSDFCPP |
LQHPYFSDFCPP | |
Retrocopy | LQHPYFSDFCPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .62 RPM | 47 .57 RPM |
SRP007412_cerebellum | 0 .24 RPM | 17 .45 RPM |
SRP007412_heart | 0 .09 RPM | 3 .06 RPM |
SRP007412_kidney | 0 .00 RPM | 8 .91 RPM |
SRP007412_liver | 0 .03 RPM | 6 .20 RPM |
SRP007412_testis | 0 .10 RPM | 4 .45 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4002 |
Pan troglodytes | retro_ptro_2717 |
Pongo abelii | retro_pabe_3290 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020258 | 1 retrocopy | |
Homo sapiens | ENSG00000164885 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001404 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016879 | 1 retrocopy |
retro_ggor_2686 ,
|
Nomascus leucogenys | ENSNLEG00000004100 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018183 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019872 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000016068 | 1 retrocopy |