Parental gene:

C9orf78, ENSCJAG00000020318

Aliases:None
Description:chromosome 9 open reading frame 78 [Source:HGNC Symbol;Acc:24932]
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:173822335..173831722(-)


>ENSCJAG00000020318
ATGCCGGTCATCAGGAAGATTTTCCGTCGCCGCCGGGGCGACTCGGAGTCAGAGGAAGATGAGCAGGACTCAGAGGAGGT
TCGATTAAAACTGGAAGAGACCAGAGAGGTACAGAACTTGAGGAAGAGGCCCAACGGGGTGAGTGCTGTGGCCCTGCTGG
TGGGAGAGAAGGTACAGGAAGAGACCACTCTAGTGGATGATCCATTTCAGATGAAGACAGGTGGTATGGTGGATATGAAG
AAACTGAAGGAAAGGGGCAAAGATAAGATTAGTGACGAGGAGGACCTGCACCTGGGGACGTCATTTTCTGCAGAAACCAA
CCGAAGGGATGAGGATGCAGACATGATGAAGTACATTGAGACAGAGCTAAAGAAGAGGAAAGGAATTGTGGAACATGAGG
AACAGAAAGTGAAGCCAAAGAACGCAGAGGACTGTCTTTATGAACTTCCAGAAAATATCCGTGTTTCTTCAGCAAAGAAA
ACTGAGGAGATGCTTTCCAACCAGATGCTGAGTGGCATTCCTGAGGTGGACCTGGGCATCGATGCTAAAATAAAAAATAT
CATTTCCACGGAGGATGCCAAGGCTCGTCTGCTGGCAGAGCAGCAGAACAAGAAGAAAGACAGCGAGACCTCCTTTGTGC
CTACCAACATGGCTGTGAATTACGTGCAGCACAACAGATTTTATCATGAGGAGCTCAATGCGCCCATACGGAGAAACAAA
GAAGAGCCCAAAGCCCGGCCCTTGAGAGTAGGCGACACGGAGAAGCCAGAGCCTGAGCGTTCCCCTCCTAACCGTAAGCG
TCCTGCTAACGAGAAGGCAACTGATGACTATCATTATGAGAAGTTCAAGAAGATGAATAGGCGGTACTGA

Library Parental gene expression (RPM)
SRP051959_colon 8 .23 RPM
SRP051959_heart 10 .61 RPM
SRP051959_kidney 16 .84 RPM
SRP051959_liver 13 .67 RPM
SRP051959_lung 14 .17 RPM
SRP051959_lymph_node 11 .78 RPM
SRP051959_skeletal_muscle 21 .75 RPM
SRP051959_spleen 13 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000019979 possible_ortholog 1 retrogene
retro_cfam_116,
Choloepus hoffmanni ENSCHOG00000013895 ortholog_one2one 3 retrogenes
retro_chof_1103, retro_chof_1747, retro_chof_978,
Dasypus novemcinctus ENSDNOG00000019214 ortholog_one2one 1 retrogene
retro_dnov_1540,
Homo sapiens ENSG00000136819 ortholog_one2one 3 retrogenes
retro_hsap_2872, retro_hsap_2913, retro_hsap_320,
Gorilla gorilla ENSGGOG00000013358 ortholog_one2one 1 retrogene
retro_ggor_1990,
Macropus eugenii ENSMEUG00000010524 ortholog_one2many 3 retrogenes
retro_meug_1046, retro_meug_1241, retro_meug_508,
Macaca mulatta ENSMMUG00000003795 ortholog_one2one 2 retrogenes
retro_mmul_1460, retro_mmul_1870,
Monodelphis domestica ENSMODG00000006832 ortholog_one2one 1 retrogene
retro_mdom_518,
Nomascus leucogenys ENSNLEG00000017658 ortholog_one2one 3 retrogenes
retro_nleu_1763, retro_nleu_614, retro_nleu_823,
Otolemur garnettii ENSOGAG00000009770 ortholog_one2one 1 retrogene
retro_ogar_1015,
Pongo abelii ENSPPYG00000019685 ortholog_one2one 1 retrogene
retro_pabe_2426,
Pan troglodytes ENSPTRG00000021465 ortholog_one2one 3 retrogenes
retro_ptro_1943, retro_ptro_1969, retro_ptro_258,
Sarcophilus harrisii ENSSHAG00000012313 ortholog_one2one 1 retrogene
retro_shar_746,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1757 54.55 67.47
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2. retro_cjac_2299 65.16 84.08
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3. retro_cjac_2778 98.96 100.00
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Download FASTA sequences of all ENSCJAG00000020318 retrocopies