Parental gene:

C9orf78, ENSG00000136819

Aliases:C9orf78, HCA59, HSPC220, bA409K20.3
Description:chromosome 9 open reading frame 78 [Source:HGNC Symbol;Acc:24932]
Organism:Human (Homo sapiens)
Coordinates:9:132589568..132598142(-)


>ENSG00000136819
ATGCCGGTCGTCCGGAAGATTTTCCGTCGCCGCCGGGGCGACTCGGAGTCAGAGGAAGATGAGCAGGACTCAGAGGAGGT
TCGATTAAAACTGGAAGAGACCAGAGAGGTACAGAACTTGAGGAAGAGGCCCAACGGGGTGAGTGCTGTGGCCTTGCTGG
TGGGAGAGAAGGTACAAGAGGAGACCACTCTAGTGGATGATCCCTTTCAGATGAAGACAGGTGGTATGGTGGATATGAAG
AAACTGAAGGAAAGGGGCAAAGATAAGATCAGTGAGGAGGAGGACCTGCACCTGGGGACATCGTTTTCTGCAGAAACCAA
CCGAAGGGATGAGGATGCAGACATGATGAAGTACATTGAGACAGAGCTAAAGAAGAGGAAAGGGATCGTGGAACATGAGG
AACAGAAAGTTAAGCCAAAGAATGCAGAGGACTGTCTTTATGAACTTCCAGAAAACATCCGTGTTTCCTCAGCAAAGAAG
ACCGAGGAGATGCTTTCCAACCAGATGCTGAGTGGCATTCCTGAGGTGGACCTGGGCATCGATGCTAAAATAAAAAATAT
CATTTCCACGGAGGATGCCAAGGCCCGTCTGCTGGCAGAGCAGCAGAACAAGAAGAAAGACAGCGAGACCTCCTTCGTGC
CTACCAACATGGCTGTGAATTATGTGCAGCACAACAGATTTTATCATGAGGAGCTCAACGCGCCCATACGGAGAAACAAA
GAAGAGCCCAAGGCCCGGCCCTTGAGAGTAGGTGACACGGAGAAGCCAGAGCCTGAGCGGTCCCCTCCTAACCGCAAGCG
TCCTGCTAACGAGAAGGCAACTGATGACTATCATTATGAGAAGTTCAAGAAAATGAATAGGCGGTACTGA

Library Parental gene expression (RPM)
bodymap2_liver 33 .99 RPM
bodymap2_lung 49 .05 RPM
bodymap2_breast 41 .17 RPM
bodymap2_adipose 46 .77 RPM
bodymap2_adrenal 92 .83 RPM
bodymap2_skeletal_muscle 53 .55 RPM
bodymap2_thyroid 73 .14 RPM
bodymap2_prostate 61 .69 RPM
bodymap2_colon 63 .50 RPM
bodymap2_testis 75 .24 RPM
bodymap2_brain 64 .67 RPM
bodymap2_heart 26 .09 RPM
bodymap2_white_blood_cells 95 .39 RPM
bodymap2_lymph_node 60 .83 RPM
bodymap2_ovary 48 .75 RPM
bodymap2_kidney 57 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000019979 possible_ortholog 1 retrogene
retro_cfam_116,
Choloepus hoffmanni ENSCHOG00000013895 ortholog_one2one 3 retrogenes
retro_chof_1103, retro_chof_1747, retro_chof_978,
Callithrix jacchus ENSCJAG00000020318 ortholog_one2one 3 retrogenes
retro_cjac_1757, retro_cjac_2299, retro_cjac_2778,
Dasypus novemcinctus ENSDNOG00000019214 ortholog_one2one 1 retrogene
retro_dnov_1540,
Gorilla gorilla ENSGGOG00000013358 ortholog_one2one 1 retrogene
retro_ggor_1990,
Macropus eugenii ENSMEUG00000010524 ortholog_one2many 3 retrogenes
retro_meug_1046, retro_meug_1241, retro_meug_508,
Macaca mulatta ENSMMUG00000003795 ortholog_one2one 2 retrogenes
retro_mmul_1460, retro_mmul_1870,
Monodelphis domestica ENSMODG00000006832 ortholog_one2one 1 retrogene
retro_mdom_518,
Nomascus leucogenys ENSNLEG00000017658 ortholog_one2one 3 retrogenes
retro_nleu_1763, retro_nleu_614, retro_nleu_823,
Otolemur garnettii ENSOGAG00000009770 ortholog_one2one 1 retrogene
retro_ogar_1015,
Pongo abelii ENSPPYG00000019685 ortholog_one2one 1 retrogene
retro_pabe_2426,
Pan troglodytes ENSPTRG00000021465 ortholog_one2one 3 retrogenes
retro_ptro_1943, retro_ptro_1969, retro_ptro_258,
Sarcophilus harrisii ENSSHAG00000012313 ortholog_one2one 1 retrogene
retro_shar_746,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_320 54.27 67.82
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2. retro_hsap_2872 75.47 53.63
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3. retro_hsap_2913 77.03 72.32
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Download FASTA sequences of all ENSG00000136819 retrocopies