Parental gene:

ENSCJAG00000031235

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:16:49497913..49563043(+)


>ENSCJAG00000031235
ATGAAGTTACACGAATGGCCAGATGAAATAGGGAAGGCCCGTACCTACACGGCGGGCCGACACGGGGACTCAAGCACCCG
GCGGAGGATGAATTTATTCACCCGGGATCGCAGCTCCTACAGCGGGCAGAAGCCCGCGGTGACGTCACGGGCCCGAGTCA
CGTGGCCAGCGCAGGGTCTCGCAGCAGCAGCTGCTCGCAGCTCCCGGGGGATCGAGGAGGGAGGCCTGTGGGCGCACGGG
CGAGTGGGCCGGGACCCGGAGCGGTTGAGGAGCCGGCAGCAGCAGCGCGGCGAGCCCCGGACGAGGCGATCGGCGCTCCT
GAAAACTTGGGCGTGCGCTCGCGCCGCTGCACCCGCAGCGATGAAGATGGTCGCGCCCTGGACGCGGTTCTACTCCAACA
GCTGCTGCCTGTGCTGCCATGTCCGCACCGGCACCATCCTGCTCGGTGTCTGGTACCTGATCATCAATGCCGTGGTACTG
TTGATTTTACTGAGTGCCCTGGCTGACCCGGATCAGTATCGCTTTTCAAGTTCTGAACTGGGCGGTGACTTTGAGTTCAT
GGATGATGCCAACATGTGCATCGCCATTGCGATTTCTGTTCTCATGATTCTGATATGTGCCATGGCTACTTACGGAGCAT
ACAAGCAACACGCAGCCTGGATTATCCCATTCTTCTGTTACCAGATCTTTGATTTTGCCCTGAACACCTTGGTTGCAATC
ACTGTGCTTGTTTATCCAAACTCCATTCAGGAATACATACGACAACTGCCTCCTAATTTTCCCTACAGAGATGATGTCAT
GTCAGTGAATCCTACGTGTTTGGTCCTTATTATTCTTCTGTTTATTAGCATTATCTTGACTTTCAAGGGTTACTTGATTA
GTTGTGTTTGGAACTGCTACCGATACATAAATGGCAGGAACTCCTCCGATGTCCTGGTTTACGTCACCAGCAATGACAAT
ACGGTGCTGCTACCCCCGTATGATGAGGCCACTGGGAATGGTGCTGCCAAGGAGCCGCCGCCACCTTACCTGTCTGGCTG
A

Library Parental gene expression (RPM)
SRP051959_colon 7 .37 RPM
SRP051959_heart 30 .17 RPM
SRP051959_kidney 5 .32 RPM
SRP051959_liver 2 .53 RPM
SRP051959_lung 5 .64 RPM
SRP051959_lymph_node 1 .05 RPM
SRP051959_skeletal_muscle 2 .03 RPM
SRP051959_spleen 4 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000016959 possible_ortholog 3 retrogenes
retro_btau_1493, retro_btau_1759, retro_btau_786,
Callithrix jacchus ENSCJAG00000007433 within_species_paralog 1 retrogene
retro_cjac_839,
Myotis lucifugus ENSMLUG00000003618 possible_ortholog 1 retrogene
retro_mluc_1182,
Macaca mulatta ENSMMUG00000008926 ortholog_one2many 1 retrogene
retro_mmul_532,
Mus musculus ENSMUSG00000022257 possible_ortholog 1 retrogene
retro_mmus_1549,
Nomascus leucogenys ENSNLEG00000003756 ortholog_one2many 1 retrogene
retro_nleu_1531,
Oryctolagus cuniculus ENSOCUG00000013689 possible_ortholog 1 retrogene
retro_ocun_627,
Otolemur garnettii ENSOGAG00000000512 ortholog_one2many 3 retrogenes
retro_ogar_1977, retro_ogar_2856, retro_ogar_2902,
Pongo abelii ENSPPYG00000018771 ortholog_one2many 2 retrogenes
retro_pabe_2311, retro_pabe_279,
Pan troglodytes ENSPTRG00000020448 ortholog_one2many 1 retrogene
retro_ptro_546,
Tursiops truncatus ENSTTRG00000003124 ortholog_one2many 1 retrogene
retro_ttru_76,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1368 82.91 56.94
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cjac_1664 80.95 66.76
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cjac_3027 92.26 85.84
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000031235 retrocopies