Parental gene:

LAPTM4B, ENSPTRG00000020448

Aliases:None
Description:lysosomal protein transmembrane 4 beta [Source:HGNC Symbol;Acc:13646]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:8:96029445..96106851(+)


>ENSPTRG00000020448
ATGACGTCACGGACTCGGGTCACATGGCCGAGTCCGCCCCGCCCCCGCCCCCTCCCCGTCCCCGCCGCTGCAGCCGTCGC
CTTCGGAGCGAAGGGTACCGACCCGGCAGAAGCTCGGAGCTCTCGGGGTATCGAGGAGGCAGGCCCGCGGGCGCACGGGC
GAGCGGGCCGGGAGCCGGAGCGGCGGAGGAGCCGGCAGCAGCGGCGCGGCGGGCTCCAGGCGAGGCGGTCGAAGCTCCTG
AAAACTTGCGCGCGCGCTCGCGCCACTGCGCCCGGAGCGATGAAGATGGTCGCGCCCTGGACGCGGTTCTACTCCAACAG
CTGCTGCTTGTGCTGCCATGTCCGCACCGGCACCATTCTGCTCGGCGTCTGGTATCTGATCATCAATGCTGTGGTACTGT
TGATTTTATTGAGTGCCCTGGCTGATCCAGATCAGTATCACTTTTCAAGTTCTGAACTGGGAGGTGACTTTGAGTTCATG
GATGATGCCAACATGTGCATTGCCATTGCGATTTCTCTTCTCATGATCCTGATATGTGCTATGGCTACTTACGGAGCGTA
CAAGCAACGCGCAGCCTGGATCATCCCATTCTTCTGTTACCAGATCTTTGACTTTGCCCTGAACATGTTGGTTGCAATCA
CTGTGCTTATTTATCCAAACTCCATTCAGGAATACATACGGCAACTGCCTCCTAATTTTCCCTACAGAGATGATGTCATG
TCAGTGAATCCTACCTGTTTGGTCCTTATTATTCTTCTGTTTATTAGCATTATCTTGACTTTTAAGGGTTACTTGATTAG
CTGTGTTTGGAACTGCTACCGATACATCAATGGTAGGAACTCCTCTGATGTCCTGGTTTATGTTACCAGCAATGACACTA
CGGTGCTGCTACCCCCGTATGATGATGCCACTGTGAATGGTGCTGCCAAGGAGCCACCGCCACCTTACGTGTCTGCCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 28 .60 RPM
SRP007412_cerebellum 14 .27 RPM
SRP007412_heart 94 .14 RPM
SRP007412_kidney 40 .72 RPM
SRP007412_liver 4 .58 RPM
SRP007412_testis 25 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000016959 possible_ortholog 3 retrogenes
retro_btau_1493, retro_btau_1759, retro_btau_786,
Callithrix jacchus ENSCJAG00000031235 ortholog_one2many 3 retrogenes
retro_cjac_1368, retro_cjac_1664, retro_cjac_3027,
Macaca mulatta ENSMMUG00000008926 ortholog_one2one 1 retrogene
retro_mmul_532,
Nomascus leucogenys ENSNLEG00000003756 ortholog_one2one 1 retrogene
retro_nleu_1531,
Otolemur garnettii ENSOGAG00000000512 ortholog_one2one 3 retrogenes
retro_ogar_1977, retro_ogar_2856, retro_ogar_2902,
Pongo abelii ENSPPYG00000018771 ortholog_one2one 2 retrogenes
retro_pabe_2311, retro_pabe_279,
Tursiops truncatus ENSTTRG00000003124 ortholog_one2one 1 retrogene
retro_ttru_76,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_546 99.30 89.03
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Download FASTA sequences of all ENSPTRG00000020448 retrocopies