Parental gene:

GABARAPL1, ENSCPOG00000006718

Aliases:None
Description:Gamma-aminobutyric acid receptor-associated protein-like 1 [Source:UniProtKB/Swiss-Prot;Acc:P60518]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_28:4356661..4365125(-)


>ENSCPOG00000006718
ATGAAGTTCCAGTACAAGGAGGACCATCCCTTCGAGTATCGGAAAAAAGAAGGAGAGAAGATCCGAAAGAAGTACCCAGA
CAGGGTCCCGGTCATTGTGGAGAAGGCTCCTAAGGCCAGGGTGCCTGATCTGGACAAGAGGAAGTACCTAGTGCCCTCTG
ACCTCACTGTTGGCCAGTTCTATTTCTTAATCCGGAAGAGGATCCACCTGAGACCTGAGGACGCCTTATTCTTCTTTGTC
AACAACACTATCCCTCCCACTAGCGCAACCATGGGCCAACTGTATGAGGACAACCATGAAGAAGACTATTTTCTGTACGT
GGCCTACAGTGATGAGAGTGTCTATGGGAAGTGA

Library Parental gene expression (RPM)
SRP017611_liver 313 .78 RPM
SRP017611_kidney 432 .78 RPM
SRP017611_brain 351 .66 RPM
SRP040447_lung 158 .87 RPM
SRP040447_skeletal_muscle 32 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000023922 within_species_paralog 1 retrogene
retro_cpor_394,
Homo sapiens ENSG00000139112 ortholog_one2one 1 retrogene
retro_hsap_60,
Oryctolagus cuniculus ENSOCUG00000016834 ortholog_one2one 3 retrogenes
retro_ocun_1380, retro_ocun_496, retro_ocun_697,
Sarcophilus harrisii ENSSHAG00000007434 possible_ortholog 1 retrogene
retro_shar_82,
Ictidomys tridecemlineatus ENSSTOG00000002246 ortholog_one2one 1 retrogene
retro_itri_391,
Tarsius syrichta ENSTSYG00000005307 ortholog_one2one 19 retrogenes
retro_tsyr_1045, retro_tsyr_1070, retro_tsyr_1101, retro_tsyr_1137, retro_tsyr_1308, retro_tsyr_1413, retro_tsyr_1467, retro_tsyr_1481, retro_tsyr_1671, retro_tsyr_1765, retro_tsyr_1800, retro_tsyr_234, retro_tsyr_573, retro_tsyr_761, retro_tsyr_796, retro_tsyr_832, retro_tsyr_864, retro_tsyr_978, retro_tsyr_999,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_232 54.43 65.81
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Download FASTA sequences of all ENSCPOG00000006718 retrocopies