RetrogeneDB ID: | retro_ocun_496 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:22033281..22033598(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GABARAPL1 | ||
Ensembl ID: | ENSOCUG00000016834 | ||
Aliases: | None | ||
Description: | GABA(A) receptor-associated protein like 1 [Source:HGNC Symbol;Acc:4068] |
Percent Identity: | 78.5 % |
Parental protein coverage: | 87.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IMKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLI-RKRI |
IMKFQYKEDHP.EY.KK.GEKI.KKYPDRVPVIVEKAPKARVPDL.KRKYL.PS.LT.GQFY.L.....I | |
Retrocopy | IMKFQYKEDHPLEYWKKKGEKIQKKYPDRVPVIVEKAPKARVPDLEKRKYLLPSGLTIGQFYILL<LEGI |
Parental | HLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFL |
HLR.ED.LFFFV.NTIP.T.AT..QLYEDNHEE.YF. | |
Retrocopy | HLRLEDVLFFFVSNTIPSTNAT*DQLYEDNHEENYFV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 174 .78 RPM |
SRP017611_kidney | 0 .10 RPM | 234 .13 RPM |
SRP017611_liver | 0 .00 RPM | 56 .26 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001218 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006718 | 1 retrocopy | |
Homo sapiens | ENSG00000139112 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002197 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006997 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016834 | 3 retrocopies |
retro_ocun_1380, retro_ocun_496 , retro_ocun_697,
|
Oryctolagus cuniculus | ENSOCUG00000022970 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000007434 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002246 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005307 | 19 retrocopies |
retro_tsyr_1045, retro_tsyr_1070, retro_tsyr_1101, retro_tsyr_1137, retro_tsyr_1308, retro_tsyr_1413, retro_tsyr_1467, retro_tsyr_1481, retro_tsyr_1671, retro_tsyr_1765, retro_tsyr_1800, retro_tsyr_234, retro_tsyr_573, retro_tsyr_761, retro_tsyr_796, retro_tsyr_832, retro_tsyr_864, retro_tsyr_978, retro_tsyr_999,
|
Tursiops truncatus | ENSTTRG00000009099 | 3 retrocopies |