Parental gene:

TAF12, ENSCPOG00000009044

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_25:7866369..7877203(+)


>ENSCPOG00000009044
ATGGCTGCCTCTCATTTCACCGGGCTCACAGCCGTGGCTGATGTAATTAAAGAACTAGACACTCAGATAGCTTTGATTGG
CCTTGGTCCTCACAGCTCCAAAAAGAAACAGGATCTCGATAAGCTCTATGAGCTGAAGTCCAAAGCTCGGCAGATTATGA
ACCAGTTTGGCCCCTCAGCACTTATCAACCTCTCCAATTTTTCATCCATAAAACCGGAACCAGCCAACACCCCTCCGCAG
GGCTCCATGGCCAATAGCACCACAGTGGTAAAGATACCAGGGACTCCTGGGACAGGAGGTCGTCTCAGCCCTGAGAACAA
TCAGGTGTTGACCAAGAAGAAGTTACAGGACTTAGTAAGAGAAGTGGATCCTAATGAACAGTTGGATGAAGATGTGGAGG
AGATGCTGCTGCAGATTGCTGATGACTTTATCGAGAGTGTGGTGACAGCAGCCTGCCAGCTTGCTCGGCATCGCAAGTCC
AGCACCCTGGAGGTGAAAGACGTCCAGCTGCATCTAGAGCGCCAGTGGAACATGTGGATCCCAGGATTCGGCTCTGAAGA
AATCCGGCCCTACAAAAAAGCTTGCACCACAGAAGCACATAAGCAGAGAATGGCACTGATCCGGAAAACAACCAAGAAA

Library Parental gene expression (RPM)
SRP017611_brain 5 .58 RPM
SRP017611_kidney 11 .72 RPM
SRP017611_liver 10 .53 RPM
SRP040447_lung 12 .08 RPM
SRP040447_skeletal_muscle 16 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004366 ortholog_one2one 4 retrogenes
retro_chof_1112, retro_chof_2145, retro_chof_2182, retro_chof_402,
Callithrix jacchus ENSCJAG00000009742 ortholog_one2one 1 retrogene
retro_cjac_2398,
Dipodomys ordii ENSDORG00000015036 ortholog_one2one 1 retrogene
retro_dord_384,
Echinops telfairi ENSETEG00000012597 ortholog_one2one 2 retrogenes
retro_etel_129, retro_etel_540,
Macropus eugenii ENSMEUG00000000914 ortholog_one2one 3 retrogenes
retro_meug_1305, retro_meug_1609, retro_meug_1730,
Myotis lucifugus ENSMLUG00000012595 ortholog_one2one 8 retrogenes
retro_mluc_1214, retro_mluc_2541, retro_mluc_2542, retro_mluc_2598, retro_mluc_403, retro_mluc_412, retro_mluc_415, retro_mluc_416,
Monodelphis domestica ENSMODG00000010943 ortholog_one2one 1 retrogene
retro_mdom_603,
Mustela putorius furo ENSMPUG00000015506 ortholog_one2one 1 retrogene
retro_mputfur_458,
Oryctolagus cuniculus ENSOCUG00000003935 ortholog_one2one 2 retrogenes
retro_ocun_510, retro_ocun_712,
Ochotona princeps ENSOPRG00000001524 ortholog_one2one 1 retrogene
retro_opri_503,
Rattus norvegicus ENSRNOG00000048288 ortholog_one2one 1 retrogene
retro_rnor_2638,
Sorex araneus ENSSARG00000007568 ortholog_one2many 5 retrogenes
retro_sara_243, retro_sara_35, retro_sara_358, retro_sara_441, retro_sara_570,
Tarsius syrichta ENSTSYG00000005320 ortholog_one2one 1 retrogene
retro_tsyr_1288,
Tursiops truncatus ENSTTRG00000005548 ortholog_one2one 1 retrogene
retro_ttru_1943,
Vicugna pacos ENSVPAG00000006779 ortholog_one2one 1 retrogene
retro_vpac_362,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_352 72.57 52.11
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2. retro_cpor_895 78.26 53.99
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3. retro_cpor_1211 77.42 87.32
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Download FASTA sequences of all ENSCPOG00000009044 retrocopies