RetrogeneDB ID: | retro_meug_1305 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold362754:590..1074(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF12 | ||
Ensembl ID: | ENSMEUG00000000914 | ||
Aliases: | None | ||
Description: | TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa [Source:HGNC Symbol;Acc:11545] |
Percent Identity: | 87.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MNQFGPSALINLSNFSSIKPEPSSTPP-QGSMANSTTVGKMPGPPGAGGRLSPESNQVLTKKKLQDLVRE |
MNQFGPSALINLS.FSSIKPEPS..PP.QGSMANSTT..KMP.PPGA.G.L..ESNQVLTKKKLQDLVRE | |
Retrocopy | MNQFGPSALINLSKFSSIKPEPSNMPP>QGSMANSTTMRKMPDPPGAEGHLNLESNQVLTKKKLQDLVRE |
Parental | VDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSNTLEVKDVQLHLERQWNMWIPGFGSEEIRPY |
VDPNEQLDEDVEE.LLQ.ADDFIESVVTA.CQLA.HRKSN.LEVKDV.LHLE.QWNMWIPGFGSEEIRPY | |
Retrocopy | VDPNEQLDEDVEEILLQTADDFIESVVTAGCQLAQHRKSNNLEVKDV*LHLEIQWNMWIPGFGSEEIRPY |
Parental | KKACTTEAHKQRMALIRKTTKK |
KKACTTEAHK.RMALI.KTTKK | |
Retrocopy | KKACTTEAHK*RMALISKTTKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004366 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000009742 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000009044 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000015036 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012597 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000000914 | 3 retrocopies |
retro_meug_1305 , retro_meug_1609, retro_meug_1730,
|
Myotis lucifugus | ENSMLUG00000012595 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000010943 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015506 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003935 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000001524 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048288 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007568 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000005320 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005548 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000006779 | 1 retrocopy |