Parental gene:

ENSCPOG00000009226

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_31:14490237..14512299(+)


>ENSCPOG00000009226
GTCACGCACTACAAACAGTACCCTCCCAACACAAGCAAAGTTTATTCCTACTTCGAATGCCGTGAAAAGAAGACAGAAAA
CTCCAAAGTAAGGAAGGTGAAATACGAGGAAACAGTATTTTATGGGTTGCAGTACATTCTTAATAAATACTTAAAAGGTA
AAGTTGTGACCAAAGAGAAAATCCAAGAAGCCAAAGAGGTGTACAAAGAACATTTCCAGGATGATGTCTTTAATGAAAAG
GGATGGAACTACATTCTTGAGAAATACGATGGGCATCTCCCTATAGAAGTAAAGGCCGTTCCTGAGGGCTCTGTCGTTCC
CAGAGGAAATGTTCTCTTCACAGTGGAAAACACAGATCCAGAGTGCTACTGGCTTACAAATTGGATCGAGACTATTCTTG
TGCAATCCTGGTATCCAATCACAGTGGCCACAAATTCTAGAGAACAGAAGAAAATATTGGCCAAATACTTGTTAGAAACT
TCTGGTAACTTAGATGGCCTGGAATACAAGCTACATGATTTTGGCTACAGAGGAGTCTCTTCCCAAGAGACTGCTGGCAT
AGGGGCGTCTGCTCACTTGGTTAACTTCAAAGGAACAGATACGGTAGCAGGAATTGCTCTGATTAAAAAATACTATGGCA
CAAAGGATCCTGTTCCAGGCTATTCTGTTCCAGCTGCAGAACACAGTACGATAACAGCTTGGGGGAAAGACCATGAAAAA
GATGCTTTTGAACATATAGTAACACAGTTTTCATCAGTGCCTGTATCTGTGGTCAGCGATAGCTATGACATTTATAATGC
ATGTGAGAAAATATGGGGTGAAGATCTAAGACATTTAATACTGTCAAGAAGTACAGAGGCACCATTAATAATCAGACCTG
ACTCTGGAAATCCTCTTGATACTGTATTAAAGGTTTTAGATATTTTAGGTAAGAAATTTCCTGTCACTGAGAACTCAAAA
GGCTACAAGTTGCTGCCACCTTATCTTAGAGTTATTCAAGGGGATGGAGTAGATATTAATACCTTACAAGAGATTGTAGA
AGGCATGAAACAAAAAAGGTGGAGCATTGAAAATGTTTCCTTTGGTTCTGGTGGAGCTTTGCTACAGAAGTTAACCAGAG
ATCTCCTGAATTGTTCCTTCAAGTGTAGCTATGTTGTCACCAATGGCCTTGGGATTAATGTCTTCAAAGACCCAGTAGCT
GATCCCAACAAAAGGTCCAAAAAGGGCCGATTATCATTACATAGGACACCAGCAGGGAATTTTGTTACTCTTGAGGAAGG
AAAAGGAGACCTTGAGGAATATGGTCAGGATCTTCTCCATACTGTCTTCAAGAATGGGAAGGTAACCAGAAGCTATTCCT
TTGATGAAGTAAGAAAGAACGCACGGCTGAACATCGAGCTGGAAGCAGCGCCTCACTAG

Library Parental gene expression (RPM)
SRP017611_liver 41 .31 RPM
SRP017611_kidney 75 .17 RPM
SRP017611_brain 19 .96 RPM
SRP040447_lung 37 .25 RPM
SRP040447_skeletal_muscle 43 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016193 ortholog_one2many 2 retrogenes
retro_cjac_1281, retro_cjac_3877,
Homo sapiens ENSG00000105835 ortholog_many2many 1 retrogene
retro_hsap_79,
Oryctolagus cuniculus ENSOCUG00000013417 ortholog_one2many 1 retrogene
retro_ocun_777,
Pongo abelii ENSPPYG00000018270 ortholog_one2many 2 retrogenes
retro_pabe_1407, retro_pabe_1415,
Pan troglodytes ENSPTRG00000019571 ortholog_many2many 1 retrogene
retro_ptro_114,
Takifugu rubripes ENSTRUG00000016695 ortholog_one2many 1 retrogene
retro_trub_33,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_848 83.65 55.30
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Download FASTA sequences of all ENSCPOG00000009226 retrocopies