RetrogeneDB ID: | retro_trub_33 | ||
Retrocopylocation | Organism: | Fugu rubripes (Takifugu rubripes) | |
Coordinates: | scaffold_220:443655..444403(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTRUG00000010639 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAMPT | ||
Ensembl ID: | ENSTRUG00000016695 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.23 % |
Parental protein coverage: | 51.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DADFNILLATDSYKVTHYKQYPPNTSKVYSYFECREKKTDPSKSHKVKYDKTVFYGLQYILHKYLKGKVV |
...FNILLATDS......KQYP.NTSKVYSYFE.REK.T..S.S.K.KY.KTVFYGLQYILHKY.KGKVV | |
Retrocopy | ECNFNILLATDS---RWHKQYPSNTSKVYSYFEYREK-TNSSNSKKIKYYKTVFYGLQYILHKYFKGKVV |
Parental | TPEKIQEAKNVYREHFQDDVFNEKGWTYILEKYKGHLPIEIKAVPEGSVIPRGNVLFTVESTDPECYWLT |
T.EKIQEAKN.YREHF.DDVFNEKGW.YIL.KY.GHLPIEIKAVPEG..IPRGNVLFTVESTD..C.WLT | |
Retrocopy | TLEKIQEAKNIYREHFHDDVFNEKGWRYILDKYNGHLPIEIKAVPEG-IIPRGNVLFTVESTDQKCNWLT |
Parental | NWVETILVQIWYPITVATNSREQKKILAKYLLETSGSLERLEYKLHDFGYR-GVSSQETAGIGASAHLVN |
NWVET..VQIWYPITV.TNSREQKKILA.YLLETSGSLE.LEYKLHDFGYR...SSQETAGIGASAHLVN | |
Retrocopy | NWVETLWVQIWYPITVTTNSREQKKILARYLLETSGSLEGLEYKLHDFGYR>SFSSQETAGIGASAHLVN |
Parental | FKGTDTVAGIGVIKKFYGTKDPVPGFSLPAAEHSTITAWGKDHEKDAF |
FKGTDT.A.IGVIKKFYGTKDPVP.FS.PAAEHS.....GK...K.AF | |
Retrocopy | FKGTDTIADIGVIKKFYGTKDPVPSFSVPAAEHSSV---GKEPRKEAF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016193 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000009226 | 1 retrocopy | |
Homo sapiens | ENSG00000105835 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013417 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018270 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019571 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000016695 | 1 retrocopy |
retro_trub_33 ,
|