Parental gene:

PFDN6, ENSCPOG00000019520

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_15:38235327..38236325(-)


>ENSCPOG00000019520
ATGGCTGAGCTAATCCAAAAGAAGCTGCAGGGAGAAGTGGAGAAATATCAACAGCTGCAGAAGGACTTGAGTAAATCCAT
GTCCGGGAGGCAGAAGCTTGAGGCACAACTAACGGAAAACAATATCGTGAAGGAGGAACTGGCCCTGCTGGATGGGTCCA
ATGTGGTCTTTAAGCTGCTGGGTCCCGTACTGGTCAAACAGGAGCTGGGGGAGGCTCGGGCCACAGTGGGAAAGAGGCTG
GACTACATCACAGCCGAAATTAAGCGATATGAATCCCAGCTCCGGGACCTGGAGCGGCAGTCGGAGCAGCAGAGGGAGAC
CCTTGCTCAGCTGCAGCAGGAGTTCCGGCGAGCCCAGGCCCAGGCCGCCAAGGCAGGGACTCCTGGGGAGGCCTGA

Library Parental gene expression (RPM)
SRP017611_liver 18 .24 RPM
SRP017611_kidney 18 .32 RPM
SRP017611_brain 18 .92 RPM
SRP040447_lung 11 .55 RPM
SRP040447_skeletal_muscle 12 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001576 ortholog_one2one 2 retrogenes
retro_amel_221, retro_amel_824,
Bos taurus ENSBTAG00000010723 ortholog_one2one 1 retrogene
retro_btau_619,
Dipodomys ordii ENSDORG00000013828 ortholog_one2one 1 retrogene
retro_dord_453,
Macropus eugenii ENSMEUG00000016778 ortholog_one2one 1 retrogene
retro_meug_1930,
Microcebus murinus ENSMICG00000000922 ortholog_one2one 1 retrogene
retro_mmur_1520,
Mus musculus ENSMUSG00000024309 ortholog_one2one 1 retrogene
retro_mmus_1930,
Oryctolagus cuniculus ENSOCUG00000010559 ortholog_one2one 1 retrogene
retro_ocun_711,
Otolemur garnettii ENSOGAG00000028341 possible_ortholog 4 retrogenes
retro_ogar_1185, retro_ogar_2023, retro_ogar_3508, retro_ogar_85,
Ochotona princeps ENSOPRG00000000983 possible_ortholog 1 retrogene
retro_opri_12,
Rattus norvegicus ENSRNOG00000000473 ortholog_one2one 2 retrogenes
retro_rnor_2216, retro_rnor_2869,
Sorex araneus ENSSARG00000006330 ortholog_one2one 2 retrogenes
retro_sara_338, retro_sara_453,
Tupaia belangeri ENSTBEG00000013280 ortholog_one2one 1 retrogene
retro_tbel_454,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_570 65.83 90.84
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Download FASTA sequences of all ENSCPOG00000019520 retrocopies