Parental gene:

RAB5B, ENSDNOG00000016952

Aliases:None
Description:RAB5B, member RAS oncogene family [Source:HGNC Symbol;Acc:9784]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_1822:35551..40355(+)


>ENSDNOG00000016952
ATGACTAGCAGAAGCACAGCCAGGCCCAATGGGCAGCCCCAGGCCAGCAAAATATGCCAGTTCAAATTGGTCCTGCTGGG
GGAATCTGCAGTGGGGAAGTCTAGCCTGGTATTACGTTTTGTCAAAGGGCAGTTCCATGAGTACCAGGAGAGCACTATTG
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAACCTT
TGCCAGAGCAAAGACATGGGTGAAGGAACTACAGCGACAGGCCAGCCCTAGCATCGTTATTGCCCTGGCGGGGAACAAAG
CTGACCTGGCCAATAAGCGCATGGTGGAGTATGAAGAGGCCCAGGCGTATGCAGATGACAACAGCTTATTGTTTATGGAG
ACTTCAGCCAAGACAGCTATGAACGTGAATGATCTCTTCCTGGCAATAGCTAAGAAGTTGCCAAAGAGCGAACCCCAGAA
TCTGGGGGGTACAGCATGCCGAAGCCGGGGTGTGGATCTCCATGAGCAGTCCCAGCAGAACAAGAGCCAGTGTTGTAGCA
ACTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 32 .87 RPM
SRP012922_cerebellum 36 .57 RPM
SRP012922_heart 11 .60 RPM
SRP012922_kidney 17 .52 RPM
SRP012922_liver 15 .17 RPM
SRP012922_lung 35 .43 RPM
SRP012922_quadricep_muscle 30 .29 RPM
SRP012922_spleen 30 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007527 ortholog_one2one 2 retrogenes
retro_cjac_1215, retro_cjac_1879,
Equus caballus ENSECAG00000023306 ortholog_one2one 1 retrogene
retro_ecab_280,
Echinops telfairi ENSETEG00000009603 ortholog_one2one 2 retrogenes
retro_etel_617, retro_etel_698,
Mus musculus ENSMUSG00000000711 ortholog_one2one 1 retrogene
retro_mmus_2081,
Nomascus leucogenys ENSNLEG00000017570 ortholog_one2one 1 retrogene
retro_nleu_2531,
Oryctolagus cuniculus ENSOCUG00000013895 ortholog_one2one 1 retrogene
retro_ocun_1193,
Ochotona princeps ENSOPRG00000007883 ortholog_one2one 3 retrogenes
retro_opri_1061, retro_opri_1116, retro_opri_299,
Procavia capensis ENSPCAG00000010486 ortholog_one2many 1 retrogene
retro_pcap_380,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_350 74.77 51.40
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Download FASTA sequences of all ENSDNOG00000016952 retrocopies