RetrogeneDB ID: | retro_etel_698 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_146918:353..825(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB5B | ||
Ensembl ID: | ENSETEG00000009603 | ||
Aliases: | None | ||
Description: | RAB5B, member RAS oncogene family [Source:HGNC Symbol;Acc:9784] |
Percent Identity: | 58.86 % |
Parental protein coverage: | 93.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AFLTQSVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQET-FARAKTWVKELQRQAS |
AFLTQ...LD..TTVKFEIWDTAGQERY.SLAPMYYR.A..A.VVYDIT.......R.K.WVKELQRQA. | |
Retrocopy | AFLTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASS>WIRPKSWVKELQRQAN |
Parental | PSIVIALAGNKADLA----NKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLP--KSEPQ |
..I.IALAGNK.DL......KR....E.A..YA....LLF.ETSAKT..NV..LF.AIAKKLP.....P. | |
Retrocopy | ENIIIALAGNKLDLVTEQPDKRAITTEDASNYAREAGLLFFETSAKTSENVRELFTAIAKKLPLDQAGPR |
Parental | NLGGAAGRSRGVDLHEQS |
N......R..GVDL.... | |
Retrocopy | NPRAGGPRGTGVDLRPEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007527 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000016952 | 1 retrocopy | |
Equus caballus | ENSECAG00000023306 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009603 | 2 retrocopies |
retro_etel_617, retro_etel_698 ,
|
Mus musculus | ENSMUSG00000000711 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017570 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013895 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007883 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000010486 | 1 retrocopy |