Parental gene: | RAB5B, ENSCJAG00000007527 |
| Aliases: | None |
| Description: | RAB5B, member RAS oncogene family [Source:HGNC Symbol;Acc:9784] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:44777811..44785451(+) |
>ENSCJAG00000007527
ATGACTAGCAGAAGCACAGCTAGGCCCAATGGGCAACCCCAGGCCAGCAAAATATGCCAGTTCAAATTGGTCCTGCTGGG
AGAATCTGCAGTGGGAAAGTCAAGCCTGGTATTACGTTTTGTCAAAGGGCAGTTCCACGAGTACCAGGAGAGCACCATTG
GAGCCATAGCGGCCTTCCTCACCCAGTCCGTTTGTTTAGATGACACAACAGTCAAGTTTGAGATCTGGGACACAGCTGGG
CAGGAGCGATACCACAGCTTAGCCCCCATGTACTACAGGGGTGCCCAAGCTGCAATCGTGGTTTATGACATTACTAATCA
GGAAACCTTTGCCCGAGCGAAGACATGGGTGAAGGAACTACAGCGACAGGCCAGTCCTAGCATCGTTATTGCTCTAGCAG
GGAACAAAGCTGACCTGGCCAACAAGCGTATGGTGGAGTATGAAGAGGCCCAGGCATATGCAGATGACAACAGCTTATTG
TTTATGGAGACTTCAGCCAAGACGGCTATGAACGTGAATGATCTCTTCCTGGCAATAGCTAAGAAGTTGCCAAAGAGTGA
ACCCCAGAATCTGGGAGGTGCAGCAGGCCGAAGCCGGGGTGTGGATCTCCATGAACAGTCCCAGCAGAACAAGAGCCAGT
GTTGTAGCAACTGA
ATGACTAGCAGAAGCACAGCTAGGCCCAATGGGCAACCCCAGGCCAGCAAAATATGCCAGTTCAAATTGGTCCTGCTGGG
AGAATCTGCAGTGGGAAAGTCAAGCCTGGTATTACGTTTTGTCAAAGGGCAGTTCCACGAGTACCAGGAGAGCACCATTG
GAGCCATAGCGGCCTTCCTCACCCAGTCCGTTTGTTTAGATGACACAACAGTCAAGTTTGAGATCTGGGACACAGCTGGG
CAGGAGCGATACCACAGCTTAGCCCCCATGTACTACAGGGGTGCCCAAGCTGCAATCGTGGTTTATGACATTACTAATCA
GGAAACCTTTGCCCGAGCGAAGACATGGGTGAAGGAACTACAGCGACAGGCCAGTCCTAGCATCGTTATTGCTCTAGCAG
GGAACAAAGCTGACCTGGCCAACAAGCGTATGGTGGAGTATGAAGAGGCCCAGGCATATGCAGATGACAACAGCTTATTG
TTTATGGAGACTTCAGCCAAGACGGCTATGAACGTGAATGATCTCTTCCTGGCAATAGCTAAGAAGTTGCCAAAGAGTGA
ACCCCAGAATCTGGGAGGTGCAGCAGGCCGAAGCCGGGGTGTGGATCTCCATGAACAGTCCCAGCAGAACAAGAGCCAGT
GTTGTAGCAACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 24 .45 RPM |
| SRP051959_skeletal_muscle | 28 .59 RPM |
| SRP051959_lymph_node | 20 .80 RPM |
| SRP051959_lung | 35 .54 RPM |
| SRP051959_liver | 27 .49 RPM |
| SRP051959_kidney | 28 .09 RPM |
| SRP051959_heart | 30 .61 RPM |
| SRP051959_colon | 25 .36 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000000472 | within_species_paralog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000003731 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000004529 | within_species_paralog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000019039 | within_species_paralog | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000016952 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000023306 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000009603 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000000711 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017570 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000013895 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000007883 | ortholog_one2one | 3 retrogenes | |
| Procavia capensis | ENSPCAG00000010486 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1215 | 60.09 | 97.24 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1879 | 77.00 | 97.70 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000007527 retrocopies