Parental gene: | CLPTM1L, ENSECAG00000013231 |
| Aliases: | None |
| Description: | CLPTM1-like [Source:HGNC Symbol;Acc:24308] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 21:56747296..56765133(+) |
>ENSECAG00000013231
ATGTGGAGCGGCCGCAGCTCCTTCACACTGGTGGTGGGCGTGTTCGTGGTGTACGTGGTGCACACCTGCTGGGTCATGTA
CGGCATCGTCTACACGCGCCCGTGCGCCGCGGACGGCAACTGCATCCTGCCCTACCTGGCGCGGAGGCCCAAGCTGCAGC
TGAGCGTGTACACGACCACCCGGTCCAACCTCGGGGCAGAGAACAACGTGGATCTGGTCTTGAACGTGGAGGACTTCGAC
GTGGAGTCCAAATTTGAAAGGACAGTTAATGTTTCTGTACCAAAGAAAACCAGGAACAATGGCACTCTGTACGCCTACAT
CTTCCTCCACCACGCTGGCGTTCTGCCGTGGCACGATGGAAAGCAGGTGCACCTGGTGAGCCCTCTGACCACCTACATGG
TCCCCAAGCCAGAAGAGGTCAATTTGCTCACAGGGGAATCAGCGACACAGCAGATCGAAGCAGAGAAGAAGCCGACAAGT
GCCCTAGACGAGCCCGTTTCTCATTGGAGACCAAGACTAACACTGAACGTGATGGTGGACGACTTCATCTTTGACGGGTC
CTCCCTGCCCGCTGACGTGCATCGGTACATGAAGATGATCCAGCTGGGGAAGACTGTGCACTACCTCCCCATCCTGTTCA
TCGACCAGCTTAGCAACCGAGTGAAGGACCTCATGGTCATAAACCGCTCCACTACCGAGCTGCCGCTCACTGTGTCCTAC
GACAAGATCTCGCTGGGGCGGCTGCGCTTCTGGATCCACATGCAGGACGCCGTGTTCTCCCTGCAGCAGTTCGGATTTTC
AGAGAAAGATGCCGATGAAGTGAAAGGCATTTTTGTTGACACCAACTTGTATTTCTTAGCGTTGACCTTCTTTGTCGCGG
CGTTTCACCTCCTTTTTGATTTCCTGGCATTTAAAAATGATATCAGTTTCTGGAAGAAAAAGAAGACCATGATTGGAATG
TCCACTAAAGCAGGGCTCATGGCCTGTTTTCTCGGCATCTTTTCTGTGCTTTTGTGGGTGGATGACCAGACGAGCCTGCT
GGTGCTGGTCCCGGCGGGCATCCGATCTGCCATCGAGCTGTGGAAAGTGAAAAAGGCATTGAAGATGACCGTTGTTTGGA
GAGGCCTGAGGCCCCAGTTTCAGTTTGGCACCTACAGCGAATCCGAGAGGAAGACCGAGGAGTATGACACCCAGGCCATG
AGGTACCTGTCGTACCTGCTCTACCCCTTGTGTGTCGGGGGCGCCGTCTACTCGCTGCTGAATGTCAAGTACAAGAGTTG
GTACTCCTGGCTGATCAACAGCTTCGTGAACGGGGTGTACGCGTTCGGCTTCCTCTTCATGCTGCCCCAGCTCTTCGTGA
ACTACAAGATGAAGTCGGTGGCGCACCTGCCCTGGAAGGCCTTCACCTACAAGGCCTTCAACACCTTCATAGACGACGTC
TTCGCCTTCATCATCACCATGCCCACCTCCCACCGGCTGGCGTGTTTCAGGGATGATGTCGTGTTCCTCGTTTACCTCTA
CCAGCGGTGGCTTTATCCTGTGGATAAGAGCAGAGTGAACGAGTTTGGGGAGTCCTACGAGGAGAAGCCGCCGCGGAAAC
CCCGCGCAGACTGA
ATGTGGAGCGGCCGCAGCTCCTTCACACTGGTGGTGGGCGTGTTCGTGGTGTACGTGGTGCACACCTGCTGGGTCATGTA
CGGCATCGTCTACACGCGCCCGTGCGCCGCGGACGGCAACTGCATCCTGCCCTACCTGGCGCGGAGGCCCAAGCTGCAGC
TGAGCGTGTACACGACCACCCGGTCCAACCTCGGGGCAGAGAACAACGTGGATCTGGTCTTGAACGTGGAGGACTTCGAC
GTGGAGTCCAAATTTGAAAGGACAGTTAATGTTTCTGTACCAAAGAAAACCAGGAACAATGGCACTCTGTACGCCTACAT
CTTCCTCCACCACGCTGGCGTTCTGCCGTGGCACGATGGAAAGCAGGTGCACCTGGTGAGCCCTCTGACCACCTACATGG
TCCCCAAGCCAGAAGAGGTCAATTTGCTCACAGGGGAATCAGCGACACAGCAGATCGAAGCAGAGAAGAAGCCGACAAGT
GCCCTAGACGAGCCCGTTTCTCATTGGAGACCAAGACTAACACTGAACGTGATGGTGGACGACTTCATCTTTGACGGGTC
CTCCCTGCCCGCTGACGTGCATCGGTACATGAAGATGATCCAGCTGGGGAAGACTGTGCACTACCTCCCCATCCTGTTCA
TCGACCAGCTTAGCAACCGAGTGAAGGACCTCATGGTCATAAACCGCTCCACTACCGAGCTGCCGCTCACTGTGTCCTAC
GACAAGATCTCGCTGGGGCGGCTGCGCTTCTGGATCCACATGCAGGACGCCGTGTTCTCCCTGCAGCAGTTCGGATTTTC
AGAGAAAGATGCCGATGAAGTGAAAGGCATTTTTGTTGACACCAACTTGTATTTCTTAGCGTTGACCTTCTTTGTCGCGG
CGTTTCACCTCCTTTTTGATTTCCTGGCATTTAAAAATGATATCAGTTTCTGGAAGAAAAAGAAGACCATGATTGGAATG
TCCACTAAAGCAGGGCTCATGGCCTGTTTTCTCGGCATCTTTTCTGTGCTTTTGTGGGTGGATGACCAGACGAGCCTGCT
GGTGCTGGTCCCGGCGGGCATCCGATCTGCCATCGAGCTGTGGAAAGTGAAAAAGGCATTGAAGATGACCGTTGTTTGGA
GAGGCCTGAGGCCCCAGTTTCAGTTTGGCACCTACAGCGAATCCGAGAGGAAGACCGAGGAGTATGACACCCAGGCCATG
AGGTACCTGTCGTACCTGCTCTACCCCTTGTGTGTCGGGGGCGCCGTCTACTCGCTGCTGAATGTCAAGTACAAGAGTTG
GTACTCCTGGCTGATCAACAGCTTCGTGAACGGGGTGTACGCGTTCGGCTTCCTCTTCATGCTGCCCCAGCTCTTCGTGA
ACTACAAGATGAAGTCGGTGGCGCACCTGCCCTGGAAGGCCTTCACCTACAAGGCCTTCAACACCTTCATAGACGACGTC
TTCGCCTTCATCATCACCATGCCCACCTCCCACCGGCTGGCGTGTTTCAGGGATGATGTCGTGTTCCTCGTTTACCTCTA
CCAGCGGTGGCTTTATCCTGTGGATAAGAGCAGAGTGAACGAGTTTGGGGAGTCCTACGAGGAGAAGCCGCCGCGGAAAC
CCCGCGCAGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 51 .58 RPM |
| SRP021940_embryo | 44 .62 RPM |
| SRP021940_cerebellum | 37 .81 RPM |
| SRP021940_testis | 131 .21 RPM |
| SRP021940_placental_villous | 66 .25 RPM |
| SRP021940_articular_cartilage | 25 .80 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000019472 | ortholog_one2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000028490 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_371 | 71.21 | 60.15 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000013231 retrocopies