Parental gene: | FAM175B, ENSECAG00000023340 |
| Aliases: | None |
| Description: | family with sequence similarity 175, member B [Source:HGNC Symbol;Acc:28975] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 1:8184416..8205799(-) |
>ENSECAG00000023340
ATGATGGGGGAGTTGGAGATTTCCATCATGGCGGCTTCCATTTCGGGCTACACCTTCAGCGCTGTGTGTTTCCACAGCGC
CAACAGCAACGCCGACCACGAAGGCTTTTTGCTGGGAGAGGTAAGACAAGAGGAAACCTTTAGCATCAGTGACTCACAAA
TCAGCAACACAGAATTTCTGCAAGTGATTGAAATCCATAACCATCACCCTTGTTCAAAACTTTTTAGTTTTTATGACTAT
GCAAGCAAAGTTAATGAAGAGAGTTTGGACAGGATTCTTAAAGACCGGAGAAAGAAAGTTATTGGGTGGTACAGATTCCG
GCGAAACACACAGCAGCAAATGTCCTACAGAGAGCAGGTTATCCATAAGCAACTCACCCGCATCCTTGGGGTGCCCGACC
TCGTCTTCCTTCTCTTCAGCTTCATCTCCACAGCCAACAATTCCACCCATGCTTTAGAATATGTTCTCTTTAGACCAAAT
CGAAGGTATAATCAAAGGATATCCCTCGCTATTCCCAATTTAGGCAATACTAGCCAGCAAGAGTATAAAGTGTCCTCAGT
GCCAAATACTTCTCAGAGCTACGCCAAAGTTATTAAAGAACATGGTACTGACTTTTTTGACAAGGATGGAGTAATGAAAG
ACATCAGGGCGATTTATCAGGTTTATAATGCGCTTCAGGAGAAAGTGCAGGCAGTTTGTGCAGATGTAGAAAAGAGTGAG
CGAGTTGTCGAATCTTGTCAGGCAGAAGTGAACAAATTAAGAAGACAAATTACTCAGAGGAAAAATGAGAAGGAACAAGA
AAGAAGATTGCAGCAGGCAATGCTCAGCAGACAGATGGCGCCTGAAAGTTTGGAACCAGGCTTCAGCCCTCGGATGCCCT
ATTCTGGGTTTGTGGCTGAAGGTAGAAGTCCACTTGGAGATGCAGAGGCCTCTGATCCTCCTCCCCCTTACTCTGATTTT
CACTCAAACAATCAAGAAAGTACTTTGAGCCATCCTCGCATGGAAACTAGTGTCTTTATGCCTCGACCTCAAGCCGTGGG
CTCTTCCAGTTATGCCTCCACCAGCGCCGGACTGAAGTACCCTGGGAGTGGAGCCGATCTTCCTCCTCCCCGAAGGGCAG
CTGCAGACAGTGCTGAGGAATCAGACGACAGTGATTATGAACATTTGATTGACCCTACAGAGCCCTCGAATAGCGAATGC
TCACATTCGAGGGATTCTCGACCCATGACACATCCCGACGGGGGCTCCAGGAACACTCAGACCTCCCAGATTTGA
ATGATGGGGGAGTTGGAGATTTCCATCATGGCGGCTTCCATTTCGGGCTACACCTTCAGCGCTGTGTGTTTCCACAGCGC
CAACAGCAACGCCGACCACGAAGGCTTTTTGCTGGGAGAGGTAAGACAAGAGGAAACCTTTAGCATCAGTGACTCACAAA
TCAGCAACACAGAATTTCTGCAAGTGATTGAAATCCATAACCATCACCCTTGTTCAAAACTTTTTAGTTTTTATGACTAT
GCAAGCAAAGTTAATGAAGAGAGTTTGGACAGGATTCTTAAAGACCGGAGAAAGAAAGTTATTGGGTGGTACAGATTCCG
GCGAAACACACAGCAGCAAATGTCCTACAGAGAGCAGGTTATCCATAAGCAACTCACCCGCATCCTTGGGGTGCCCGACC
TCGTCTTCCTTCTCTTCAGCTTCATCTCCACAGCCAACAATTCCACCCATGCTTTAGAATATGTTCTCTTTAGACCAAAT
CGAAGGTATAATCAAAGGATATCCCTCGCTATTCCCAATTTAGGCAATACTAGCCAGCAAGAGTATAAAGTGTCCTCAGT
GCCAAATACTTCTCAGAGCTACGCCAAAGTTATTAAAGAACATGGTACTGACTTTTTTGACAAGGATGGAGTAATGAAAG
ACATCAGGGCGATTTATCAGGTTTATAATGCGCTTCAGGAGAAAGTGCAGGCAGTTTGTGCAGATGTAGAAAAGAGTGAG
CGAGTTGTCGAATCTTGTCAGGCAGAAGTGAACAAATTAAGAAGACAAATTACTCAGAGGAAAAATGAGAAGGAACAAGA
AAGAAGATTGCAGCAGGCAATGCTCAGCAGACAGATGGCGCCTGAAAGTTTGGAACCAGGCTTCAGCCCTCGGATGCCCT
ATTCTGGGTTTGTGGCTGAAGGTAGAAGTCCACTTGGAGATGCAGAGGCCTCTGATCCTCCTCCCCCTTACTCTGATTTT
CACTCAAACAATCAAGAAAGTACTTTGAGCCATCCTCGCATGGAAACTAGTGTCTTTATGCCTCGACCTCAAGCCGTGGG
CTCTTCCAGTTATGCCTCCACCAGCGCCGGACTGAAGTACCCTGGGAGTGGAGCCGATCTTCCTCCTCCCCGAAGGGCAG
CTGCAGACAGTGCTGAGGAATCAGACGACAGTGATTATGAACATTTGATTGACCCTACAGAGCCCTCGAATAGCGAATGC
TCACATTCGAGGGATTCTCGACCCATGACACATCCCGACGGGGGCTCCAGGAACACTCAGACCTCCCAGATTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 7 .08 RPM |
| SRP021940_embryo | 12 .25 RPM |
| SRP021940_cerebellum | 8 .57 RPM |
| SRP021940_testis | 8 .50 RPM |
| SRP021940_placental_villous | 5 .77 RPM |
| SRP021940_articular_cartilage | 7 .73 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000023840 | ortholog_one2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000007635 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_839 | 64.41 | 51.18 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000023340 retrocopies