>retro_chof_2426
AAAGTTACTGGTTGGTACAGATTTTGATGAAACGCACAGCAGCAGATGTCGTACAGAGAGCAAGTCATCCACAAGCAGCT
TACCGGATCCTTGGCGTACCTGACCTTATCTTCCTTCTCTACAGCTTCATCTCCACCGCCAACAATTCTACTCATGCTTT
AGAATATGTTCTCTTTAGACCAAATCGAAGGTATAATCAAAGGATATCACTTGCTATTCCCAACCTAGGCAATACTAGCC
AGCAGGAGTACAAAGTGTCTTCAGTGCCAAATACTTCTCAGAGTTATGCCAAAGTTATTAAAGAACATGGTACCAACTTT
TTTGACAAGGATGGAGTAATGAAAGACATCAGGGCCATTTATCAGGTTTGTAACGCACTTCAGGAGAAAGTACAGGCAGT
GTGTGCAGGTGTAGAAAAGAGTGAGCAAGTTGTTGAATCTTGTCAGGCAGAAGTGAACAAATTAAAAAGACAAATCACTC
AAAGGAAAAATGAAAAGGGACAGGAAAGAAGATCGCAGCCGACGATGTTAAGCAGACAGATGCCACCTGAAAGTCTGGAA
CCAGTGTTCAGCCCTCGGATGCCCTATTCCGGGTTTGCAGCTGAAGGTGGAATTACACTTGGAGATGCAGAGGCCACCGA
TCCTCCTCCCCCTTATTCTGATTTTAACCCAAACAATCAAGAAAGTACTTTAAGCCATTCTCACGTGGAAAGTAGCGTCT
TTATGCCTCGACCTCAAGCCGTGGGCTCCTCCAGTGATGCTTCCACCGGTGCTGGACTGAAGCATCCTGGAAGTGGAGCA
GAGCTTCCTCCTTCCCAAAGAGCAGCTGGAGACAGTGTTGATGAATCAGACGACAGCGATTATGAAAATTCGATTAACCC
TACAGAGCCCTCCAATAGTGAATCCTCCCATCCGAGGGATCCACGGCCCACGACACATCCTGATGGAGACTCCAGGAACA
CTCAGGCCTCCCAGATT
ORF - retro_chof_2426 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90.83 % |
Parental protein coverage: |
83.38 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | KVIGWYRFRRNTQQQMSYREQVIHKQLT-RILGVPDLVFLLFSFISTANNSTHALEYVLFRPNRRYNQRI |
| KV.GWYRF..N.QQQMSYREQVIHKQLT.RILGVPDL.FLL.SFISTANNSTHALEYVLFRPNRRYNQRI |
Retrocopy | KVTGWYRF**NAQQQMSYREQVIHKQLT<RILGVPDLIFLLYSFISTANNSTHALEYVLFRPNRRYNQRI |
|
Parental | SLAIPNLGNTSQQEYKVSSVPNTSQSYAKVIKEHGTDFFDKDGVMKDIRAIYQVYNALQEKVQAVCADVE |
| SLAIPNLGNTSQQEYKVSSVPNTSQSYAKVIKEHGT.FFDKDGVMKDIRAIYQV.NALQEKVQAVCA.VE |
Retrocopy | SLAIPNLGNTSQQEYKVSSVPNTSQSYAKVIKEHGTNFFDKDGVMKDIRAIYQVCNALQEKVQAVCAGVE |
|
Parental | KSERVVESCQAEVNKLKRQITQRKNEKEQERRLQQTMLSRQMPPESLEPVFSPRMPYSGFAAEGRITLGD |
| KSE.VVESCQAEVNKLKRQITQRKNEK.QERR.Q.TMLSRQMPPESLEPVFSPRMPYSGFAAEG.ITLGD |
Retrocopy | KSEQVVESCQAEVNKLKRQITQRKNEKGQERRSQPTMLSRQMPPESLEPVFSPRMPYSGFAAEGGITLGD |
|
Parental | AEATDPPPPYSDFNPNNQESTLSHSRVESSVFMPRPQAVGSSNYASTSAGLNYPGYGAELSPSQRAAGDS |
| AEATDPPPPYSDFNPNNQESTLSHS.VESSVFMPRPQAVGSS..AST.AGL..PG.GAEL.PSQRAAGDS |
Retrocopy | AEATDPPPPYSDFNPNNQESTLSHSHVESSVFMPRPQAVGSSSDASTGAGLKHPGSGAELPPSQRAAGDS |
|
Parental | VDESDNSVYENLIDPTEPSNSESSHPRDSRPTTHSDGHSRNTQASQI |
| VDESD.S.YEN.I.PTEPSNSESSHPRD.RPTTH.DG.SRNTQASQI |
Retrocopy | VDESDDSDYENSINPTEPSNSESSHPRDPRPTTHPDGDSRNTQASQI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_2426 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
6 retrocopies.