>retro_ecab_839
TTTGACAAGCATAGAGTAATGAAAGACACTGAGGTAATTTACAGGTTTATAATACACTTCACCCAGGCAGTGCGTGCAGA
TGTAGAAAAGAATGAGCAAGTTGTTGAATCTTGTCAGGCAGAAGTGAACAAATTAAGAAGACAAATCAATCAGATGAAAT
GGAAAAGAACAAGAAAGACGATTGCAGCAGGCGATGCTAAGCAGACAGATGCTGTATGAAAGTTTGGAACCAGTGGTCAG
TCCTCGGATGCCCTAACTGGGTTTTTAGCTGAAGGTTGAAGTACACTGGGAGATGCAGAGGATTCTGGTCCTCCTCCTTC
TTATTCTGGTTTTTCACTCACACAGTCTGGAAAGTACTTTGAGCCTTTCTCTATGTAAAGTAGTGTCTTTGTACCTTGAC
CTCAAGCCATGGGCTCTTCCAATTATGCTTCCACCAGTGCCGGACTGAAGTATCCCAGAAGTGGAGAAGACTTTCTTCCT
TCCCAAAGAGTAGCTGGAGACAGACTTGAAGAATCAGATAAAAGTGATTACGAAAATTTGATTGATCTTACAGAGCTTTC
TAATAGGGAATACTTACATTCAAGGAATTCAGGATACGTGACATATTCCCATGGGGTCTCCAGGAACACTCAGACCTCA
ORF - retro_ecab_839 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
64.41 % |
Parental protein coverage: |
51.18 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | FDKDGVMKDIRAIYQVYNALQEKVQAVCADVEKSERVVESCQAEVNKLRRQITQRK-NEKEQE-RRLQQA |
| FDK..VMKD...I...Y.......QAV.ADVEK.E.VVESCQAEVNKLRRQI.Q.K..EK....RRLQQA |
Retrocopy | FDKHRVMKDTEVI---YRFIIHFTQAVRADVEKNEQVVESCQAEVNKLRRQINQMK<MEKNKK<RRLQQA |
|
Parental | MLSRQMAPESLEPGFSPRMP-YSGFVAEGRSPLGDAEASDPPPPYSD-FHSNNQESTLSHP-RMETSVFM |
| MLSRQM..ESLEP..SPRMP...GF.AEG.S.LGDAE.S.PPP.YS..FHS...ESTLS....M..SVF. |
Retrocopy | MLSRQMLYESLEPVVSPRMP<LTGFLAEG*STLGDAEDSGPPPSYSG>FHSHSLESTLSLS<SM*SSVFV |
|
Parental | PRPQAVGSSSYASTSAGLKYPGSGADLPPPRRAAADSAEESDDSDYEHLIDPTEPSNSECSHSRDSRPMT |
| P.PQA.GSS.YASTSAGLKYP.SG.D..P..R.A.D..EESD.SDYE.LID.TE.SN.E..HSR.S...T |
Retrocopy | P*PQAMGSSNYASTSAGLKYPRSGEDFLPSQRVAGDRLEESDKSDYENLIDLTELSNREYLHSRNSGYVT |
|
Parental | HPDGGSRNTQTS |
| ...G.SRNTQTS |
Retrocopy | YSHGVSRNTQTS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
7 .73 RPM |
SRP021940_cerebellum |
0 .00 RPM |
8 .57 RPM |
SRP021940_embryo |
0 .00 RPM |
12 .25 RPM |
SRP021940_placental_villous |
0 .00 RPM |
5 .77 RPM |
SRP021940_synovial_membrane |
0 .05 RPM |
7 .08 RPM |
SRP021940_testis |
0 .00 RPM |
8 .50 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_839 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_839 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_839 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
5 retrocopies.