Parental gene: | ENSEEUG00000013364 |
| Aliases: | None |
| Description: | None |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | scaffold_283098:3526..10147(-) |
>ENSEEUG00000013364
TTTGTACGACTTAGAGGACTCCCCTTTGGATGTAGCAAGGAAGAAATTGTTCAGTTCTTCTCAGGGTTGGAAATCGTGCC
AAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCTTCACAGGAAATAG
CTGAAAAGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTATATTGAAATCTTTAAGAGCAGCCGAGCTGAAGTT
AGAACTCACTATGACCCACCACGAAAGCTAATGGCCATGCAGCGGCCAGGTCCCTATGACAGACCTGGGGCTGGCAGGGG
ATATAACAGCATTGGCAGAGGAGCTGGCTTTGAAAGGATGCGGCGTGGTGCTTATGGTGGAGGGTATGGAGGCTCTGGGG
ATTATGGAGGCTATGATGATGGCTATGGATTTGGGTCAGATAGATTTGGAAGAGACCTCAATTACTGTTTTTCAGGAATG
TCTGATCACAGATATGGAGATGGTGGTTCTACTTTCCAGAGCACCACAGGTCACTGTGTACACATGAGGGGACTACCTTA
CAGAGCAACCGAGAATGACATTTATAACTTTTTTTCACCACTCAACCCTGTGAGAGTACATATTGAAATTGGTCCTGATG
GTAGAGTAACTGGTGAAGCAGATGTTGAGTTTGCAACTCATGAAGATGCGGTGGCAGCTATGTCAAAAGACAAAGCCAAT
ATGCAACACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTACGAACACAGATATGTAGA
ACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTATGGTAGCCAAATGATGGGAGGCATGGGCTTGTCAAACC
AATCCAGTTATGGTGGCCCAGCCAGCCAGCAGCTGAGTGGTGGTTATGGAGGTGGCTATGGCGGCCAGAGCAGCATGAGC
GGATATGGTAGCCAAGGAACAGTGAACAGCAGCTACTACAGTAGCGGAAGCCGTGCATCTATGGGCGTGAACGGAATGGG
CGGGATGTCTAGCATGTCCAGTATGAGTGGTGGATGGGGAATGTAA
TTTGTACGACTTAGAGGACTCCCCTTTGGATGTAGCAAGGAAGAAATTGTTCAGTTCTTCTCAGGGTTGGAAATCGTGCC
AAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCTTCACAGGAAATAG
CTGAAAAGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTATATTGAAATCTTTAAGAGCAGCCGAGCTGAAGTT
AGAACTCACTATGACCCACCACGAAAGCTAATGGCCATGCAGCGGCCAGGTCCCTATGACAGACCTGGGGCTGGCAGGGG
ATATAACAGCATTGGCAGAGGAGCTGGCTTTGAAAGGATGCGGCGTGGTGCTTATGGTGGAGGGTATGGAGGCTCTGGGG
ATTATGGAGGCTATGATGATGGCTATGGATTTGGGTCAGATAGATTTGGAAGAGACCTCAATTACTGTTTTTCAGGAATG
TCTGATCACAGATATGGAGATGGTGGTTCTACTTTCCAGAGCACCACAGGTCACTGTGTACACATGAGGGGACTACCTTA
CAGAGCAACCGAGAATGACATTTATAACTTTTTTTCACCACTCAACCCTGTGAGAGTACATATTGAAATTGGTCCTGATG
GTAGAGTAACTGGTGAAGCAGATGTTGAGTTTGCAACTCATGAAGATGCGGTGGCAGCTATGTCAAAAGACAAAGCCAAT
ATGCAACACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTACGAACACAGATATGTAGA
ACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTATGGTAGCCAAATGATGGGAGGCATGGGCTTGTCAAACC
AATCCAGTTATGGTGGCCCAGCCAGCCAGCAGCTGAGTGGTGGTTATGGAGGTGGCTATGGCGGCCAGAGCAGCATGAGC
GGATATGGTAGCCAAGGAACAGTGAACAGCAGCTACTACAGTAGCGGAAGCCGTGCATCTATGGGCGTGAACGGAATGGG
CGGGATGTCTAGCATGTCCAGTATGAGTGGTGGATGGGGAATGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 93 .25 RPM |
| SRP017611_kidney | 233 .67 RPM |
| SRP017611_brain | 170 .49 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000003841 | possible_ortholog | 4 retrogenes | |
| Equus caballus | ENSECAG00000014429 | possible_ortholog | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000010991 | within_species_paralog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000011303 | possible_ortholog | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000015766 | ortholog_one2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000016625 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000010843 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000009436 | possible_ortholog | 3 retrogenes | |
| Ochotona princeps | ENSOPRG00000003513 | possible_ortholog | 1 retrogene | |
| Procavia capensis | ENSPCAG00000006715 | possible_ortholog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000007670 | possible_ortholog | 1 retrogene | |
| Sorex araneus | ENSSARG00000003024 | possible_ortholog | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000018204 | possible_ortholog | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000007485 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_478 | 68.98 | 50.97 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_eeur_649 | 80.82 | 79.78 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000013364 retrocopies