RetrogeneDB ID: | retro_eeur_478 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_321125:3739..4296(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000002727 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000013364 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.98 % |
Parental protein coverage: | 50.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GFERMRRGAYGGGYGGSG-DYGGYDDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRG |
G..RMR..AY..GYGG....Y.G..DGYGF..D.FGRDL.YC.SGM.DHRYGDG..T.QSTTGHCVHMRG | |
Retrocopy | GLDRMRSDAYSAGYGGYE<EYSGLTDGYGFTTDLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVHMRG |
Parental | LPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA |
LPY.ATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE.AVAAMSKD.ANMQHRY.ELFLNST. | |
Retrocopy | LPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT |
Parental | GASGGAYEHRYVELFLNSTAGASGGAYGSQMMG--GMGLSNQSSYGG |
GAS.GAY..........S......G.......G..G.G.S.Q.S.GG | |
Retrocopy | GASNGAYSSQMMQGMGVSAQSTYSGLESQSVSGCYGAGYSGQNSMGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 44 .15 RPM | 170 .49 RPM |
SRP017611_kidney | 135 .97 RPM | 233 .67 RPM |
SRP017611_liver | 66 .72 RPM | 93 .25 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003841 | 4 retrocopies | |
Equus caballus | ENSECAG00000014429 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000010991 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013364 | 2 retrocopies |
retro_eeur_478 , retro_eeur_649,
|
Echinops telfairi | ENSETEG00000011303 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000015766 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000016625 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010843 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009436 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000003513 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000006715 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000007670 | 1 retrocopy | |
Sorex araneus | ENSSARG00000003024 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000018204 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007485 | 2 retrocopies |