Parental gene:

CHP1, ENSFCAG00000006346

Aliases:None
Description:calcineurin-like EF-hand protein 1 [Source:HGNC Symbol;Acc:17433]
Organism:Cat (Felis catus)
Coordinates:B3:63755963..63797391(-)


>ENSFCAG00000006346
ATGGGGTCTCGGGCTTCCACGTTATTGCGGGACGAAGAGCTCGAGGAGATCAAGAAGGAGACTGGCTTTTCCCACAGTCA
GATCACCCGCCTCTACAGCCGATTCACCAGCCTGGACAAAGGAGAGAATGGGACTCTCAGCCGGGAAGATTTCCAACGGA
TTCCAGAACTTGCCATCAACCCACTGGGGGACCGGATCATCAATGCCTTCTTTCCGGAGGGAGAGGACCAGGTAAACTTC
CGTGGATTCATGAGAACTTTGGCTCATTTTCGACCCATTGAGGATAATGAAAAGAGCAAAGATGTGAATGGACCAGAACC
ACTCAATAGCCGAAGCAACAAACTGCACTTTGCTTTTCGACTATATGATTTGGATAAAGATGACAAGATTTCCCGTGATG
AGCTATTACAGGTGCTACGTATGATGGTCGGAGTAAATATCTCAGATGAGCAGCTGGGCAGCATTGCAGACAGGACCATC
CAGGAGGCTGATCAGGATGGGGACAGCGCCATCTCTTTTACAGAGTTTGTTAAGGTTTTGGAGAAGGTGGACGTAGAACA
GAAAATGAGCATCCGATTTCTTCAC

Library Parental gene expression (RPM)
SRP017611_brain 55 .89 RPM
SRP017611_kidney 24 .32 RPM
SRP017611_liver 21 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000027173 ortholog_one2one 1 retrogene
retro_btau_1785,
Callithrix jacchus ENSCJAG00000020761 ortholog_one2one 1 retrogene
retro_cjac_2396,
Equus caballus ENSECAG00000019751 ortholog_one2one 1 retrogene
retro_ecab_1099,
Felis catus ENSFCAG00000028482 within_species_paralog 1 retrogene
retro_fcat_1639,
Gorilla gorilla ENSGGOG00000007312 ortholog_one2one 2 retrogenes
retro_ggor_1293, retro_ggor_2392,
Loxodonta africana ENSLAFG00000014743 ortholog_one2one 3 retrogenes
retro_lafr_221, retro_lafr_795, retro_lafr_838,
Oryctolagus cuniculus ENSOCUG00000013832 ortholog_one2one 1 retrogene
retro_ocun_68,
Otolemur garnettii ENSOGAG00000013099 ortholog_one2one 2 retrogenes
retro_ogar_2442, retro_ogar_628,
Procavia capensis ENSPCAG00000005419 ortholog_one2one 1 retrogene
retro_pcap_240,
Pongo abelii ENSPPYG00000006370 ortholog_one2one 2 retrogenes
retro_pabe_2749, retro_pabe_2925,
Pteropus vampyrus ENSPVAG00000003150 ortholog_one2one 1 retrogene
retro_pvam_1207,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_1964 61.54 53.33
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Download FASTA sequences of all ENSFCAG00000006346 retrocopies