RetrogeneDB ID: | retro_ggor_2392 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 6:161297614..161297998(+) | ||
Located in intron of: | ENSGGOG00000001658 | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000022414 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHP1 | ||
Ensembl ID: | ENSGGOG00000007312 | ||
Aliases: | None | ||
Description: | calcineurin-like EF-hand protein 1 [Source:HGNC Symbol;Acc:17433] |
Percent Identity: | 84.38 % |
Parental protein coverage: | 86.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | REDFQRIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHF |
..DFQ.IPELAINP.GD.IINAF.PEGEDQVNFRGF..TLAHFR.IEDNEKSKDVNGPEPLNSRSNKL.F | |
Retrocopy | QDDFQGIPELAINPVGDWIINAFLPEGEDQVNFRGFLQTLAHFRTIEDNEKSKDVNGPEPLNSRSNKLQF |
Parental | AFRLYDLDKDEKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTE |
AFRLYDLDKD.KISRDELL..L.MMV.VNISD.QLGSIADRTIQEADQ.GDSAIS... | |
Retrocopy | AFRLYDLDKDNKISRDELLRLLCMMVQVNISDKQLGSIADRTIQEADQHGDSAISLSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .19 RPM | 48 .24 RPM |
SRP007412_cerebellum | 0 .16 RPM | 13 .00 RPM |
SRP007412_heart | 0 .09 RPM | 4 .75 RPM |
SRP007412_kidney | 0 .29 RPM | 41 .18 RPM |
SRP007412_liver | 0 .82 RPM | 32 .89 RPM |
SRP007412_testis | 0 .21 RPM | 17 .61 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3541 |