RetrogeneDB ID: | retro_pabe_2749 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:73080212..73080650(-) | ||
Located in intron of: | ENSPPYG00000015546 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHP | ||
Ensembl ID: | ENSPPYG00000006370 | ||
Aliases: | CHP1, CHP | ||
Description: | calcium-binding protein p22 [Source:RefSeq peptide;Acc:NP_001127537] |
Percent Identity: | 86.99 % |
Parental protein coverage: | 74.87 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | DFQRIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAF |
DF.RIPEL.INPL.D.IINAFFPEGEDQVNFRGFM.TLAHF.PIEDNEKSKDVNGPEPLNS.SNKL.FAF | |
Retrocopy | DFLRIPELVINPLED*IINAFFPEGEDQVNFRGFM*TLAHFHPIEDNEKSKDVNGPEPLNSQSNKLQFAF |
Parental | RLYDLDKDEKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKM |
RLY..DKD.K.SR.EL.QVLR.MV.VNISDEQLG.IADRTIQEADQDGDSAI.FTEFVKVLEKVDVEQKM | |
Retrocopy | RLYNFDKDDKLSRGELIQVLRLMVRVNISDEQLGCIADRTIQEADQDGDSAIYFTEFVKVLEKVDVEQKM |
Parental | SIRFLH |
SI.FLH | |
Retrocopy | SI*FLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 48 .16 RPM |
SRP007412_cerebellum | 0 .00 RPM | 16 .29 RPM |
SRP007412_heart | 0 .00 RPM | 12 .64 RPM |
SRP007412_kidney | 0 .03 RPM | 28 .97 RPM |
SRP007412_liver | 0 .09 RPM | 15 .55 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3334 |
Pan troglodytes | retro_ptro_2144 |
Gorilla gorilla | retro_ggor_1293 |
Macaca mulatta | retro_mmul_2088 |