Parental gene:

SNF8, ENSFCAG00000008944

Aliases:None
Description:SNF8, ESCRT-II complex subunit [Source:HGNC Symbol;Acc:17028]
Organism:Cat (Felis catus)
Coordinates:E1:38441405..38449888(+)


>ENSFCAG00000008944
ATGCATCGCCGCGGGGTGGGAGCCGGCNGGCTACAGACCAGTCGTCTATTACAGGCCAAGTACAAGGAGCGAGGAACTGT
CTTGGCTGAGGACCAGCTGGCCCAGATGTCAAAGCAGTTGGACATGTTCAAGACCAACCTGGAGGAATTTGCCAGCAAGC
ATAAGCAGGAGATCCGGAAGAATCCAGAATTCCGGGTGCAGTTCCAGGACATGTGCGCCACCATCGGGGTGGATCCTCTG
GCCTCTGGAAAAGGATTTTGGTCTGAGATGCTGGGCGTGGGAGATTTCTATTATGAGCTGGGTGTTCAGATCATCGAAGT
GTGCCTGGCCCTGAAGCACCGGAATGGAGGTCTGATAACTCTGGAGGAACTACATCAGCAGGTGTTAAAAGGAAGGGGCA
AATTCGCACAGGATGTCAGCCAAGACGACCTTATCAGGGCCATCAAGAAGCTGAAGGCGCTCGGCACCGGCTTTGGCATC
ATCCCCGTGGGTGGCACCTACCTCATTCAGTCTGTTCCGGCTGAGCTCAATATGGACCACACGGTGGTGCTGCAGCTGGC
GGAGAAAAGTGGCTACGTGACCGTCAGCGATATCAAAGCCAGTCTTAAATGGGAGACCGAGCGAGCGCGGCAAGTGCTGG
AACACCTGCTGAAGGAAGGGCTGGCCTGGCTGGACCTGCAGGCCCCCGGGGAGGCCCACTACTGGCTGCCCGCTCTTTTC
ACGGACCTCTACTCCCAGGAGATTACAGCCGAGGAGGCCAGAGAAGCCCTCCCCTGA

Library Parental gene expression (RPM)
SRP017611_liver 16 .48 RPM
SRP017611_kidney 34 .11 RPM
SRP017611_brain 21 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005062 ortholog_one2one 1 retrogene
retro_amel_164,
Canis familiaris ENSCAFG00000016893 ortholog_one2one 1 retrogene
retro_cfam_1488,
Choloepus hoffmanni ENSCHOG00000013760 ortholog_one2one 1 retrogene
retro_chof_1372,
Callithrix jacchus ENSCJAG00000007322 ortholog_one2one 2 retrogenes
retro_cjac_1175, retro_cjac_1922,
Echinops telfairi ENSETEG00000000758 ortholog_one2one 1 retrogene
retro_etel_709,
Homo sapiens ENSG00000159210 ortholog_one2one 1 retrogene
retro_hsap_2394,
Gorilla gorilla ENSGGOG00000025290 ortholog_one2one 1 retrogene
retro_ggor_1816,
Macropus eugenii ENSMEUG00000016638 ortholog_one2one 1 retrogene
retro_meug_663,
Mustela putorius furo ENSMPUG00000015356 ortholog_one2one 1 retrogene
retro_mputfur_1425,
Mus musculus ENSMUSG00000006058 ortholog_one2one 1 retrogene
retro_mmus_1050,
Nomascus leucogenys ENSNLEG00000002743 ortholog_one2one 1 retrogene
retro_nleu_2520,
Oryctolagus cuniculus ENSOCUG00000009156 ortholog_one2one 2 retrogenes
retro_ocun_814, retro_ocun_996,
Pongo abelii ENSPPYG00000008911 ortholog_one2one 1 retrogene
retro_pabe_2161,
Tarsius syrichta ENSTSYG00000004576 ortholog_one2one 1 retrogene
retro_tsyr_843,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_574 77.78 95.74
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2. retro_fcat_1291 74.19 59.30
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Download FASTA sequences of all ENSFCAG00000008944 retrocopies