RetrogeneDB ID: | retro_ocun_814 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:97007334..97007729(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNF8 | ||
Ensembl ID: | ENSOCUG00000009156 | ||
Aliases: | None | ||
Description: | SNF8, ESCRT-II complex subunit [Source:HGNC Symbol;Acc:17028] |
Percent Identity: | 66.92 % |
Parental protein coverage: | 50.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RGVGAGAIAKKKLAEAKYKE-RGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMC |
RGVGA.AI.KK.LA..K.K...GTVLA...LAQMSKQL..FKT.LEE.ASKH..E.RKNPEF.VQFQD.. | |
Retrocopy | RGVGASAITKKQLAWTKHKK>QGTVLAKGLLAQMSKQLNVFKTSLEESASKHE*EVRKNPEFWVQFQDVR |
Parental | ATIGVDPLASGKGFWSQMLGVGD-FYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGK |
AT.G..PLASGKGFWS.ML.VG..F.YEL.VQ.IEVC...KHRNG.L.TLEE..QQVL..... | |
Retrocopy | ATTGAHPLASGKGFWSEMLCVGR>FFYELDVQVIEVCPTRKHRNGSLLTLEEPRQQVLNASSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 28 .97 RPM |
SRP017611_kidney | 0 .00 RPM | 51 .79 RPM |
SRP017611_liver | 0 .00 RPM | 20 .42 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005062 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000016893 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013760 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007322 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000000758 | 1 retrocopy | |
Felis catus | ENSFCAG00000008944 | 2 retrocopies | |
Homo sapiens | ENSG00000159210 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025290 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016638 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015356 | 1 retrocopy | |
Mus musculus | ENSMUSG00000006058 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002743 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009156 | 2 retrocopies |
retro_ocun_814 , retro_ocun_996,
|
Pongo abelii | ENSPPYG00000008911 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004576 | 1 retrocopy |