RetrogeneDB ID: | retro_fcat_574 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:141559128..141559870(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNF8 | ||
Ensembl ID: | ENSFCAG00000008944 | ||
Aliases: | None | ||
Description: | SNF8, ESCRT-II complex subunit [Source:HGNC Symbol;Acc:17028] |
Percent Identity: | 77.78 % |
Parental protein coverage: | 95.74 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | MHRRGVGAGXLQTSRLLQAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFAS-KHKQEIRKNPEFRVQFQ |
MH...VGAG......L..AKYK..GT.LAEDQLAQMSKQLDMFKTNLEEFAS..HKQEI.KNPEF.VQFQ | |
Retrocopy | MHCHRVGAGPIAKKKLAEAKYKK*GTALAEDQLAQMSKQLDMFKTNLEEFAS<QHKQEIQKNPEFWVQFQ |
Parental | DMCATIGV-DPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLK-GRGKFAQ |
D.CAT.GV.DPL.SG.GFW..M.GVGDFYYELGVQIIEVCL.LKHR.GG.ITLE.L.QQV.K.GRG.F.Q | |
Retrocopy | DTCATVGV<DPLPSGRGFWPKMVGVGDFYYELGVQIIEVCLTLKHRDGGVITLEKLQQQVFK>GRGSFTQ |
Parental | DVSQDDLIRAIKKLKALGTGF-GIIPVGGTYLIQSVPAELNMDHTVVLQLAEKSGYVTVSDIKASLKWET |
D.SQD.LIRA.K.LKA..TGF.GII..GGTYLIQSVPAELNMDHTVVLQLAEK.GYVTVSDIKASLKWE. | |
Retrocopy | DISQDNLIRAVKTLKAPATGF>GIISAGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSDIKASLKWEA |
Parental | ERARQVLEHLLKEGLAWL-DLQAPGEAHYWLPALFTDLYSQE |
..ARQVLEHLLKE..AWL.DLQAP.E.H.WLPALFTDL.S.E | |
Retrocopy | K*ARQVLEHLLKEQRAWL>DLQAPEETHHWLPALFTDLCS*E |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 34 .11 RPM |
SRP017611_liver | 0 .00 RPM | 16 .48 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005062 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000016893 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013760 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007322 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000000758 | 1 retrocopy | |
Felis catus | ENSFCAG00000008944 | 2 retrocopies |
retro_fcat_1291, retro_fcat_574 ,
|
Homo sapiens | ENSG00000159210 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025290 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016638 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015356 | 1 retrocopy | |
Mus musculus | ENSMUSG00000006058 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002743 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009156 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008911 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004576 | 1 retrocopy |