RetrogeneDB ID: | retro_tsyr_843 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_214909:358..814(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNF8 | ||
Ensembl ID: | ENSTSYG00000004576 | ||
Aliases: | None | ||
Description: | SNF8, ESCRT-II complex subunit [Source:HGNC Symbol;Acc:17028] |
Percent Identity: | 89.47 % |
Parental protein coverage: | 68.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQII |
M.KQL.MFKTNLE.FASKHKQEIRKNPEFRVQFQDMCATIG.DPLASGKGFWSEMLGVGDFYYELGVQII | |
Retrocopy | MLKQLGMFKTNLEKFASKHKQEIRKNPEFRVQFQDMCATIGLDPLASGKGFWSEMLGVGDFYYELGVQII |
Parental | EVCLALKHRNGGLITLEELQHEVLKGKGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAE |
EVCLALKHRNGGLITLEEL...VLKG.GKFAQDVSQ.DLIRAIKKLKALGTGF.IIPV..TY.IQSVPAE | |
Retrocopy | EVCLALKHRNGGLITLEELHQQVLKGSGKFAQDVSQNDLIRAIKKLKALGTGFSIIPVSSTYFIQSVPAE |
Parental | LNMDHTVVLQLA |
LNMDH.V.L.LA | |
Retrocopy | LNMDHIVMLPLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005062 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000016893 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013760 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007322 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000000758 | 1 retrocopy | |
Felis catus | ENSFCAG00000008944 | 2 retrocopies | |
Homo sapiens | ENSG00000159210 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025290 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016638 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015356 | 1 retrocopy | |
Mus musculus | ENSMUSG00000006058 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002743 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009156 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008911 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004576 | 1 retrocopy |
retro_tsyr_843 ,
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